Virgibacillus halodenitrificans: BME96_08225
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Entry
BME96_08225 CDS
T04548
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
vhl
Virgibacillus halodenitrificans
Pathway
vhl03410
Base excision repair
vhl03430
Mismatch repair
vhl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vhl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BME96_08225
03430 Mismatch repair
BME96_08225
03440 Homologous recombination
BME96_08225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vhl03400
]
BME96_08225
DNA repair and recombination proteins [BR:
vhl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BME96_08225
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BME96_08225
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BME96_08225
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
HGD-D
Motif
Other DBs
NCBI-ProteinID:
APC48162
UniProt:
A0A6L8K2M0
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Position
1592561..1594885
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AA seq
774 aa
AA seq
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MLESKATWKHNEMNDTIIDWIDSSINVSPIVQELLLQRGIKEGSQALRFLSPDLNDLHKP
IGLLSIDKAGKRVKEAITNQEKILVYGDYDADGVSSTTVLLKALKELGANCDYYIPNRFT
EGYGPNEDAFRLAYENGAKLIITVDCGIASVQEALVAKELGMDLIITDHHEVQEKIPDAY
AVIHPKCSPDYGFPELAGVGVAFKFAEHLLGYFPGHLLEFVAIGTIADLVPLISENRILT
FHGLKSLTTTTNPGIKALKGRCNIEGNVTEEDVGFLIGPRINAVGRLQNADLAVQLLMTE
DQEEADYIAERIDSINLERQRIVNDIVKEAELMVNSTNKKGIIIAAKEGWNEGVLGIVAS
KLVRKYDRPAIVLAVKPETSEVKGSARSIPAFDLFKNCMTVRELFTHFGGHAQAAGMTLP
MDNLSKLQEELNRIIDNQLTEEDFKQAIEISQSISVKDINEKLINDIARLAPFGMKNPKP
VFHLTHAPKDVRQIGSKKTHLKLHFKEEEVNLEGIGFGFGHLYPLFTPKTLVSIVGELGI
NEWNGFRKPQIVLQDLAIEEWQLFDCRGKKDADVSQYISLTNNNLIVSNNNEEYLPGIKQ
ITYQEIGTDLPQVDTLYILDLPDSLDELKELVQITQPKNVYAGYHVENSVYLTSFPSRDD
FKWLYALLLKRKQIDMKTELNKLVQMKGWSKEKLIFLSKVFFELEFVKIENGIITVVDKP
VKKDLSESEIYQKRKYKAELERILYYSNYEELRNWFIQCMDYVDSPKEELAHGL
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgttagagagtaaagcaacatggaagcataatgaaatgaatgatacaatcattgactgg
atagatagctccattaatgtctctcctattgtccaagagcttctattgcaaagaggtatt
aaggaaggaagtcaagcattacgatttctctccccggatttaaatgatttacataaaccg
attggtcttttatctatagataaagcgggtaaaagagtaaaagaggctataaccaaccag
gagaaaatactcgtttatggggactatgatgccgatggcgtaagctctactactgtttta
ttgaaagccttaaaagagctcggagccaattgtgattattatattccgaaccggtttaca
gaagggtacggccctaatgaagatgctttcagattagcatatgaaaacggggctaagctg
atcatcactgtagactgtggcattgcctcggtccaagaagcattagttgcgaaagaacta
ggtatggatttaataattacggatcatcatgaggtacaagagaagataccagacgcttat
gctgttatccaccctaaatgctcaccagattatggttttccggaattagcaggtgttggc
gtcgcttttaaatttgccgaacatttactaggctactttcctggacatctattagaattt
gtcgcaattggtacgatagctgatttggttccacttatcagtgaaaatcgtattcttaca
tttcatggtttgaaatcacttactactacaacaaatccaggtataaaggcattgaaaggt
cgctgtaatatagaaggaaatgtcacagaggaggacgtaggttttttgattggtcctcgt
attaatgcagttggcagactccagaatgcagatttggccgtacaactactcatgacagag
gaccaggaggaagctgattatattgctgaaagaattgattctattaaccttgagcggcaa
cgaattgtaaatgatatagtaaaagaagcagagttaatggttaattcgactaataaaaaa
ggcattattatcgctgcaaaagaagggtggaatgagggagtattaggaattgtagcttct
aaacttgttcggaaatatgaccgcccagctattgttttggctgttaagccggaaacatcg
gaagtaaaaggttcagcgagaagtattccagcatttgatttatttaaaaattgtatgaca
gtaagagaattgttcacacactttggaggacacgcacaagcagcaggcatgacattaccg
atggataacctcagcaaattacaagaggaattaaatcgtattattgataatcaacttacc
gaagaggactttaaacaagcgatagaaataagtcaaagtatttctgtgaaagacataaat
gagaaattaattaatgatattgcacgtttagcaccttttggaatgaaaaatccaaaaccc
gtatttcatctaactcatgctccaaaagatgtaagacaaattggcagtaaaaaaactcac
ttaaaacttcattttaaagaggaagaagttaatttggagggtattggctttggctttggc
cacctatatcctttatttacgccgaagacgcttgtctcgattgtaggagaactaggtatt
aatgaatggaatggatttagaaaaccacagattgttttacaggatctggcaatagaggaa
tggcagttatttgactgccgcggaaaaaaagacgcagatgtgtcacaatatatctcatta
actaacaataatttaatcgtaagtaataataacgaagaatacttacctggaatcaaacag
attacctaccaggaaattggaactgatttaccacaggtggatacgctgtatatattagat
ctccctgattcgcttgatgaactaaaagaattggttcaaattactcaaccgaagaacgtc
tacgctggttatcacgtggaaaatagtgtttacttaacatcatttccatctagagatgat
tttaagtggctttatgctcttttgttgaaaagaaagcaaattgacatgaaaacagagtta
aataaacttgtgcaaatgaagggctggtcaaaggaaaaattgatctttctttcaaaagtg
ttttttgaattggaatttgttaaaatagaaaatggtatcattaccgttgtagataagcca
gtcaaaaaagatttgagtgaatctgaaatatatcagaagagaaaatataaagctgaattg
gaaagaattttgtactattccaattatgaagaattgagaaattggttcatacaatgtatg
gattatgtagatagccccaaggaggaactagctcatggattataa
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