KEGG   Vibrio harveyi: AL538_00040Help
Entry
AL538_00040       CDS       T04380                                 

Definition
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
vhr  Vibrio harveyi
Pathway
vhr03030  DNA replication
vhr03410  Base excision repair
vhr03420  Nucleotide excision repair
vhr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vhr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AL538_00040
   03410 Base excision repair
    AL538_00040
   03420 Nucleotide excision repair
    AL538_00040
   03430 Mismatch repair
    AL538_00040
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vhr03032]
    AL538_00040
   03400 DNA repair and recombination proteins [BR:vhr03400]
    AL538_00040
Enzymes [BR:vhr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AL538_00040
    6.5.1.6  DNA ligase (ATP or NAD+)
     AL538_00040
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     AL538_00040
DNA replication proteins [BR:vhr03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    AL538_00040
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     AL538_00040
DNA repair and recombination proteins [BR:vhr03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     AL538_00040
   NER (nucleotide excision repair)
    Other NER factors
     AL538_00040
   MMR (mismatch exicision repair)
    Other MMR factors
     AL538_00040
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: AMF96223
UniProt: A0A2S0SD61
LinkDB All DBs
Position
1:7100..7942
Genome map
AA seq 280 aa AA seqDB search
MPLRMTLIALAVIASAQPHADPNLQPPVSLADSYQDGIDVSQYWYSEKLDGIRAYWTGQH
LVTRNGNRIYAPDWFIRVLPDYPLDGELWAGRGNFHLVQQTVLDKTPIESAWQRIDFMLF
DMPYSAGDYRKRYYNIQDLVFAIDAPHIKYVEHRAIQDEKHLFEQLDQISQSDGEGVMLR
KVSSRYQAGRGSDLLKLKRFEDAEATVIGYKPGTGRLLGMMGAVLVRLADGTEFYIGSGF
TDDVRKSPPRIGATITFRYNGYTHNGKPRFARFLRERVPH
NT seq 843 nt NT seq  +upstreamnt  +downstreamnt
atgccattaagaatgacattgattgccctcgctgtaattgcttccgcccagcctcatgct
gatccaaatttacaaccacctgtttcactcgctgattcctaccaagatggaattgatgtt
tcccaatattggtatagtgaaaagctcgatggcattcgtgcttactggacgggacaacat
ttagtgacacgaaatggaaatcgtatttacgcacctgattggtttattcgcgtcttgcct
gattatcccttagatggggagctatgggccgggcggggcaacttccaccttgttcaacaa
accgtgttagataaaaccccaattgaaagtgcatggcaacgtatcgactttatgttgttt
gatatgccttattcggcgggtgactacaggaagcgttactacaacattcaagatttggta
tttgccatcgacgcacctcatattaagtatgttgagcatcgtgcgattcaagatgagaaa
catttgttcgaacaacttgaccaaatttcgcaatctgatggtgaaggtgtgatgttgaga
aaggtatcaagccgttatcaggcgggaagaggcagtgatttactcaagcttaaacgcttt
gaggatgctgaagcgacggtcatcggttataagccaggaacagggcgattgttagggatg
atgggggcggtactggtaaggttagctgacggcacagagttttacattggcagcggtttt
actgatgacgtgaggaaatccccgccaagaattggggcaacgattactttccgatacaac
ggttatacgcataacggtaagccaagattcgcacgattcttaagagagcgagtgcctcat
tga

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