Vibrio harveyi: AL538_21890
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Entry
AL538_21890 CDS
T04380
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
3.6.4.13
]
Organism
vhr
Vibrio harveyi
Pathway
vhr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vhr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL538_21890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vhr03019
]
AL538_21890
Enzymes [BR:
vhr01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.13 RNA helicase
AL538_21890
Messenger RNA biogenesis [BR:
vhr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AL538_21890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
CMS1
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AMG00343
UniProt:
A0A3A1PSI5
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All DBs
Position
2:complement(1035501..1037081)
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AA seq
526 aa
AA seq
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MGFTSLGLSAPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPIL
ERLSNGPRVRGNHIRALVLTPTRELAAQVQENVFMYSRHLPLTSAVVFGGVKINPQMLRL
RKGADVLVATPGRLMDLYNQNAVKFDQLEMLVLDEADRMLDMGFIRDIRKILELLPKQRQ
NLLFSATFSNEIRELAKGLVNNPVEISVNPANSTARTVEQCIYPADVKKKAPMLVKLIKD
GDWKQVLVFTKTKHGANRLAKFLIDQKITAAAIHGNKSQGARTKALADFKSGEVRVLVAT
DIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAVSLVCALEASELFAIER
LIQQLLPRKELEGYAPTNVLPESKLDTRPIKPKKPKKPKKPKAEGENGQTAEKKNNGGNN
NPKRRFNSDNKNGKGENKSGKGGAGKPKGNRDGQARTNDKPSGNKPNTKQPNTNKSGANK
NGNGGKPSGNRKPNSGKPAGAKPSNGKPSGNKPSGQRRKPRPQVAK
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgggttttacctcgttaggtctatctgctccaatccttaaggctattcaggaaaaaggc
tacgacaccccttcgccgattcaggctcaagcaattcctgctgttttggaagggaaagac
gtaatggcagcagcacagactggtacaggtaaaacggcgggctttacgctgccaattctt
gaacgtctgtcaaacggtccacgcgtacgcggcaaccacatccgcgcattggtgctgaca
ccaactcgtgagcttgctgcccaggtacaagaaaacgtattcatgtacagccgtcactta
cctctaacgagtgcagtggtatttggtggtgttaagatcaacccacaaatgcttcgcctg
cgtaaaggtgcagacgtcttggttgcaacaccaggtcgcctaatggacctatacaaccaa
aatgcagtgaagttcgaccaactagagatgctagtactggacgaagcagaccgcatgctt
gacatgggtttcattcgcgacattcgcaagattcttgaattgctaccgaagcaacgtcaa
aacctattgttctctgcgacattctcaaacgaaatccgtgagcttgcgaaaggtctggtc
aacaaccctgttgagatttcagttaacccagcaaactcgacagcacgcaccgtagaacaa
tgcatctacccagcagacgtgaagaagaaagcaccaatgctggtcaagctgatcaaagat
ggcgattggaaacaagtattggtatttaccaaaaccaagcatggcgcgaaccgcttagcc
aagttcctaatcgaccaaaagattacagcagctgcaattcacggcaataagagccaaggc
gcacgtactaaagctctggctgactttaaatctggcgaagttcgcgtattagtcgcaaca
gacatcgctgcgcgcggtatcgacattcctcagcttcctcaagtggttaactttgagctg
ccaaaagtagctgaagactacgttcaccgtatcggtcgtaccggtcgtgctggtgaagtg
ggtaaagcggtttctttagtatgcgcacttgaagcatccgagttgtttgcgattgaacgt
ttaattcaacaactgctgcctcgtaaagaactggaaggctacgcaccaactaacgtattg
ccagagtcgaagcttgatactcgccctatcaagccaaagaaaccgaaaaagcctaagaag
ccaaaagcagaaggtgaaaacggtcaaacagccgagaagaaaaacaacggcggtaacaac
aacccaaagcgtcgtttcaacagcgacaacaaaaatggcaagggcgaaaacaaatcaggc
aaaggcggcgctggtaagccaaaaggcaaccgtgatggtcaagctcgcacaaacgacaag
ccaagcggtaacaagccgaataccaaacagcctaatacgaacaaatcaggcgcaaataaa
aatggtaacggtggtaaaccatcaggaaaccgcaagcctaacagcggtaaacctgcgggt
gcaaaaccttcaaacggcaaaccgtcaggcaacaagccatcaggacaacgtcgcaagcca
cgtccgcaagtagcaaaataa
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