Vulgatibacter incomptus: AKJ08_2338
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Entry
AKJ08_2338 CDS
T04035
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vin
Vulgatibacter incomptus
Pathway
vin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AKJ08_2338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vin03019
]
AKJ08_2338
03400 DNA repair and recombination proteins [BR:
vin03400
]
AKJ08_2338
Enzymes [BR:
vin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AKJ08_2338
Messenger RNA biogenesis [BR:
vin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AKJ08_2338
DNA repair and recombination proteins [BR:
vin03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AKJ08_2338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DUF3553
PCM1_C
Motif
Other DBs
NCBI-ProteinID:
AKU91951
UniProt:
A0A0K1PEV9
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All DBs
Position
2737015..2738787
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AA seq
590 aa
AA seq
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MTDLTLEGLRALARERFGIKRFRPGQAEVIQASLEGRDVLAILPTGGGKSLTYQLPALAL
EGTTVVVSPLISLMQDQVEKLRAVGADVAMVNSTLSGRELKAVVETIGQGAHQLAYVTPE
RLADPSFRRVLARARPQLFVVDEAHCVSQWGHDFRPAYLGLASAIDELGHPPVLALTATA
TDKVIGDIVRQLGMRRPQVILGSFDRENLFFEVVSTTTEPGRRRRLVELVKRSRGSGIVY
CATIQHVEEIAQLLAESGVEVGRYHGQMRARDREAVQRAFMGSGSPRVIVATNAFGLGVD
KPDIRFVIHAQMPGSLEAYFQEAGRAGRDGRPSRCTLLYQAGDRRVQAYFLGGRYPRPED
VIRVSRALERHGRSEPVAIEALANAAEVPVRTARVVTSLLTEIGLATEEEGATVRATGLH
ASDEDLASAALRYEEKRREDRARLDATVRYATSTLCRTRILLAYFGEDGPSTCNHCDNCV
RRVRRAEEDARKEEERRLSEEAEARAAAARAAAEAAAAEGRRPLRPMRAFRPAKKKARET
GRSPVLAPGSRVRHPAFGEGEVLDVQDDRVTAFFPGRGERTVKRAFLEQT
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
ttgaccgacctgaccctggagggcctccgagcgctggcccgcgagcgcttcggcatcaag
cgcttccgcccgggacaggccgaggtgatccaggccagcctcgagggccgcgacgtcctc
gcgatcctccccaccggcggcggaaagagcctcacctaccagctccccgcgctggcgttg
gaggggaccaccgtcgtggtctcgccgctgatctccctcatgcaggaccaggtggagaag
ctccgcgccgtcggcgccgacgtggcgatggtgaactccaccctctccggccgcgagctg
aaggcggtcgtcgagacgatcggacagggcgcccaccagctcgcctacgtgacccccgag
cgcctcgccgacccctcattccgccgggtgctcgcccgggcgcggccccagctcttcgtg
gtcgacgaggcccactgcgtctcccagtggggccacgacttccgcccggcctacctgggc
ctcgcctcggccatcgacgagctcggccatccgcccgtcctcgccctcaccgccacggcc
accgacaaggtgatcggcgacatcgtccgccagctcgggatgcgcaggccccaggtcatc
ctgggcagcttcgaccgggagaacctcttcttcgaggtggtctccaccaccaccgagccg
ggcaggcggcgccgactcgtcgagctcgtgaagcgctcgcgcggctccggcatcgtctac
tgcgccaccatccagcacgtggaggagatcgcgcagctcctcgcggagagcggcgtcgag
gtcggccgctaccacggacagatgcgcgcccgcgatcgcgaggcggtccagcgcgcgttc
atgggcagcggatcgccacgggtgatcgtcgccaccaacgccttcggccttggcgtggac
aagcccgacatccgcttcgtgatccacgcccagatgccgggctcgctcgaagcctatttc
caggaggcgggccgcgccggccgcgacgggaggccctcgcggtgcacccttctctaccag
gcgggggatcgccgggtgcaggcctacttcctcggcggccgctatccccgccccgaggac
gtgatccgcgtcagccgggcgctggagcgccacggccggtccgagcccgtcgccatcgag
gccctggcgaacgccgccgaggtccccgtgcgcacggcacgggtggttacatcgcttctc
accgagatcgggctcgccaccgaggaggagggcgcgaccgtgcgcgccaccggcctgcac
gcctccgacgaggatctcgcctccgccgcgctccgctacgaggagaagcgccgggaggat
cgcgccaggctcgacgcgacggttcgctacgccacctcgaccctctgccgcacccggatc
ctcctcgcctacttcggcgaggacgggccctccacctgcaaccactgcgacaactgcgtg
cgccgggttcggcgggccgaagaggacgcccgcaaggaggaggagcgcaggctctccgag
gaggccgaggcccgcgcggcggccgcccgagccgcggcggaggctgcggctgcggagggg
agacgcccgctgcggccgatgcgggccttccgcccagcgaagaagaaggccagggagacc
ggacgatcgccggtgctcgccccgggctcccgggtccgccaccccgccttcggcgagggc
gaggtcctcgacgtccaggacgatcgggtcaccgccttcttccccggccgcggcgagcgg
accgtgaagcgggcctttctcgagcagacttaa
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