KEGG   Verrucosispora maris: VAB18032_28881Help
Entry
VAB18032_28881    CDS       T01471                                 

Gene name
ligB
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
vma  Verrucosispora maris
Pathway
vma03030  DNA replication
vma03410  Base excision repair
vma03420  Nucleotide excision repair
vma03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vma00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    VAB18032_28881 (ligB)
   03410 Base excision repair
    VAB18032_28881 (ligB)
   03420 Nucleotide excision repair
    VAB18032_28881 (ligB)
   03430 Mismatch repair
    VAB18032_28881 (ligB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vma03032]
    VAB18032_28881 (ligB)
   03400 DNA repair and recombination proteins [BR:vma03400]
    VAB18032_28881 (ligB)
Enzymes [BR:vma01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     VAB18032_28881 (ligB)
    6.5.1.6  DNA ligase (ATP or NAD+)
     VAB18032_28881 (ligB)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     VAB18032_28881 (ligB)
DNA replication proteins [BR:vma03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    VAB18032_28881 (ligB)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     VAB18032_28881 (ligB)
DNA repair and recombination proteins [BR:vma03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     VAB18032_28881 (ligB)
   NER (nucleotide excision repair)
    Other NER factors
     VAB18032_28881 (ligB)
   MMR (mismatch exicision repair)
    Other MMR factors
     VAB18032_28881 (ligB)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-ProteinID: AEB46847
UniProt: F4F695
LinkDB All DBs
Position
complement(5418508..5420124)
Genome map
AA seq 538 aa AA seqDB search
MRFLDLAATSAAVAATSGRRAKVELLAEALRRLDPVEIAAGAGWLAGELRQRQTGVGWAG
LRDLPPPAAEPTLTVGAVDAAIDAIAAVHGSGSQARRRALVHSLYAAATADEQRLLTGLF
LGELRHGAQAGLLADAIARAAGVPVAAVRRALLLAGDLREVAVAALAGGAAALAGFGLRV
GRPLAPMLAQSASSVDEALAATGTPAVVDVKLDGIRIQVHRSGSDIAVFTRSLDDITARV
PEVVAAVRALPARELVLDGEAIGLDETGRPLPFQQTSSAAARRGGSAGARSTGGPTAAAP
VAPAVRAAAASTGTTVLTPYFFDLLHLDGTDLIDAPGRERWAVLRGTVDAGLLVGRMEVD
EPQRAGEAFAAALDAGQEGVVVKAPDAPYEAGRRGAAWIKVKPRHTLDLVVLAVEWGSGR
RTGWLSNLHLGARDPRTGEFVMLGKTFKGLTDDLLRWQTERFLGLAVERGDWVVRVRPEQ
VVEIAFDGVQTSSRYPGGVALRFARVVRYREDKSAAEADTIDTVRAIHAGRPPAAPSP
NT seq 1617 nt NT seq  +upstreamnt  +downstreamnt
gtgcgattcctcgacctggctgccacctccgcagccgtcgccgcgaccagcggccggcgg
gcgaaggtcgagttgctcgccgaggcgttgcgccggctcgatccggtcgagatcgcggcg
ggagccggctggctcgccggtgagctgcgccagcggcagaccggtgtcggctgggccggc
ttgcgtgacctgccgccaccggcggcggagccgaccctgaccgtcggtgcggtcgacgcg
gccatcgacgcgatcgccgcggtgcacggcagcggatcacaggcccgtcgccgtgccctg
gtgcacagtctttacgcggcggccaccgccgacgagcagcggctgctcaccgggctgttc
ctcggcgagctgcgtcacggcgctcaggcggggctgctcgccgacgcgatcgcccgcgcc
gccggggtgccggtcgccgccgtacgccgcgcgttgctgctcgccggtgacctgcgtgag
gtggcggtggccgcgctcgccggtggcgctgccgccctggccgggttcgggctgcgggtc
gggcggccactcgcgccgatgctggcccagagcgcgtcctcggtcgacgaggcgttggcc
gccacgggcacccccgccgtggtcgacgtcaagctcgacggcatccgcatccaggtgcac
cgcagcgggtcggacatcgccgtgttcacccgcagcctggacgacatcaccgcccgggtg
cccgaggtggtcgccgcggtgcgggccctgccggcccgggagctggtcctcgacggcgag
gccatcggcctggacgagacgggccgacccctgcccttccagcagacctccagcgccgcc
gcccgacgcggcgggtcagccggtgcccggtccacaggcgggccgaccgctgccgcgccg
gtcgccccggcggtgcgcgccgccgccgcgagcaccggcacgacggtgctcacgccctac
ttcttcgacctgctgcatctggacggcacggatctgatcgacgcgccgggccgcgagcgg
tgggcggtgctgcgcggcacggtcgacgccgggttgctggtggggcggatggaggtggac
gagccgcagcgggccggcgaggccttcgccgccgcgctcgacgccggccaggaaggtgtc
gtggtcaaggcacccgacgcgccgtacgaagcgggccggcgcggcgcggcgtggattaag
gtcaagcctcggcacaccctggatctggtcgtgctcgccgtcgagtggggcagtggccgt
cgcaccggctggctgtccaacctgcacctgggggcgcgtgatccgcgcaccggcgagttc
gtgatgctgggcaagaccttcaaggggctcaccgacgacctgctgcgctggcagaccgaa
cgcttcctaggcctggcggtggagcggggcgactgggtggtgcgggtccgccccgagcag
gtggtggagatcgccttcgacggcgtgcagaccagttcgcgctatcccggtggggtggcg
ctgcgcttcgcgcgggtggtgcggtaccgcgaggacaagtccgccgccgaggccgacacg
atcgacaccgttcgcgccatccacgccggccgcccaccggccgcgccatcgccgtag

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