Vibrio neocaledonicus: D3H41_13500
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Entry
D3H41_13500 CDS
T06228
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent helicase HrpB [EC:
5.6.2.6
]
Organism
vnl
Vibrio neocaledonicus
Brite
KEGG Orthology (KO) [BR:
vnl00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
D3H41_13500 (hrpB)
Enzymes [BR:
vnl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
D3H41_13500 (hrpB)
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Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
ResIII
HA2_N
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QCO87029
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All DBs
Position
1:complement(2737293..2739761)
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AA seq
822 aa
AA seq
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MSQLPIEAVMPELLTAVKNQHQVILKAAPGAGKSTYFPLQLLLNHSVAGKIIMLEPRRLA
ARNIARYLAEQLGEQVGQRVGYRVRGEAKVSSATQLEIVTEGIMTRMIQTDPELDGVDLL
IFDEFHERSIHADTALAFSLEVQEALRDDLKLVVMSATLDQQALQSLLPEASYIESEGRS
FDVAMRYQPLGVNEHLPTSMAKTIESLMNKESGSLLAFLPGVGAIKQVEERLSHLADDID
VCPLYGQLSFADQQKAITPAEQGKRKVVLATNIAETSLTIEGIRLVVDSGLERIARFDLK
NGLTRLEQTRIAQSSAIQRAGRAGRIEEGICVRLYSENQFKQQPLVPQPEILHSDLASLV
MELAFWGASDIHDLKWLDVPANASLEQAKQLLVSLGLLTEKGQLTSEGKQAHELGVEPRA
AAMLIKAQSYSDKMLNAALAAVALIEEPERSVTNIAYSLHRWLVGTHPKKSMLFKRAQSL
AYKLDTVFDLKGVDEDALPLVLSLAFPDRIAQQRTNQFGRFTLANGHGAECRQEDMLGGC
EYLVAVDLMRSHSNSSQIHSACELDVNILRTTFDTLFSSEEVVDWDEKRGRLIAERQTKL
GLLVVERESLPSPGKEKMTQALLTYVRRQGLQSLNWTPAAESLLARIRCAVEWLPEQSWP
MFDEASLLDSLEEWLEPYMTSVSSVKDLSKINLVEALNARLGWPLNQQLDEWLPEHYQLP
TGSKKRIRYQYGHEPILSVRMQEVFGESGSPTVALGRKRLVLELLSPAQRPLQVTSDLAA
FWNGSYKDVQKEMKGRYPKHVWPDDPANHVATTKTKRQLNND
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
ttgtcacaattgccgattgaagccgtgatgcctgagttgctgacggcggtcaaaaatcaa
catcaagtgatcttaaaagcggcgcctggtgccggtaagtcgacttacttccctttgcag
ttactcttaaatcattcggttgctggaaaaatcatcatgcttgagccaagacgactcgcg
gcgcgtaacattgcccgttatcttgctgagcaattgggagaacaagttggtcaacgcgtg
ggttatcgagttcgtggcgaggcaaaggtaagttctgcaacgcagctggagatcgtgacc
gaagggatcatgaccaggatgatccaaactgaccctgaactggatggggttgatctactg
atctttgatgagtttcatgaacgcagcattcatgccgataccgctttggcattcagttta
gaagttcaagaggcattgcgagacgatctcaagctggtggtaatgtcggcaacgcttgac
caacaagcattacaatcgttgttgccggaagccagttacattgaatctgaagggcgcagc
tttgatgtggcaatgcgctaccagccgttaggtgtgaacgagcatttacctacgagtatg
gcaaaaacaatagaaagtcttatgaacaaagagtctggatctttgttagctttcctaccg
ggtgttggtgccataaaacaagttgaagagcggttgtctcatttagcggatgatatcgac
gtatgcccactttatggtcaactgagctttgcagatcaacaaaaagcgattacgccagca
gaacaaggtaagcgtaaagtcgttctagcgaccaacattgcagaaacttcactaacgatt
gaaggcattcgcctcgtcgttgattctgggttagagcgtattgcccgctttgatttgaaa
aacggtttaacacgcttagagcaaacacgcattgcacagtcttcagcgattcagcgtgca
ggacgagcgggacgaatagaagagggcatttgtgttcgtctttattctgaaaaccagttc
aagcagcaaccgctggttccccaacccgaaattttgcattccgatttagctagtttagtt
atggagcttgccttttggggagcgagtgatatccacgatctaaagtggcttgatgttccc
gctaatgcgtcattggaacaagcgaagcagctattggtgtcattgggactactgacggaa
aaagggcaattaacgtccgaaggaaaacaggcgcatgaactaggcgttgagcctcgtgcg
gctgcgatgctaattaaagcgcaatcttacagtgataagatgttaaatgctgctttggcg
gcggtcgcactgattgaagagccagagagaagtgttaccaatatcgcttatagcttgcat
cgttggcttgttggtactcatccaaaaaagtcgatgttgttcaagcgtgctcaatctctg
gcgtacaaattggatacggtatttgacctgaaaggcgtggatgaagatgcattaccgctg
gtgttaagtttggcatttccagatcgcattgcgcagcagcgcacaaatcaatttgggcga
tttactttggctaatggtcatggtgcagaatgtcgtcaggaagacatgctaggtggctgt
gagtatttggttgccgttgacttaatgcgttctcattctaattcaagtcaaattcattcg
gcatgtgaattggatgtcaatatattgcgaacgacctttgatacgctattttcgtctgaa
gaagtagtggactgggatgaaaaaagaggccgtctaatagctgagcgacaaacaaaactc
ggtctgctggtcgttgaacgcgagtcgttgccaagcccgggcaaagaaaaaatgacacaa
gctttactcacgtatgtccgccgccagggcttacagagtctaaactggacaccggcagcg
gagagcttgttggctcggattcgttgtgcggtggaatggttacctgagcagtcatggcca
atgtttgatgaagccagtttgctggattcattagaggagtggttagaaccatacatgacg
tctgtcagttcggttaaagacctgagcaagataaacttggtcgaagcacttaatgctcga
ttaggttggccactcaatcaacaactggatgaatggttacctgagcattaccaactgccc
acaggttcaaagaagcgtatccgttaccaatatggccatgagccgatattatcggtgcgt
atgcaagaagtatttggggagagtggttccccaacggtggctcttggccgcaagcgtttg
gtgcttgaactgctttcaccggcacaacgtccattgcaagtaacgtcggacttggcggct
ttctggaacggaagctacaaagacgttcaaaaagagatgaaagggcgctacccaaaacac
gtttggccagatgatcctgccaatcatgtagcaacaacgaaaacaaaaagacaattgaat
aatgactga
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