Vibrio neocaledonicus: D3H41_22330
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Entry
D3H41_22330 CDS
T06228
Name
(GenBank) DNA-3-methyladenine glycosylase 2 family protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
vnl
Vibrio neocaledonicus
Pathway
vnl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vnl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
D3H41_22330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vnl03000
]
D3H41_22330
03400 DNA repair and recombination proteins [BR:
vnl03400
]
D3H41_22330
Enzymes [BR:
vnl01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
D3H41_22330
Transcription factors [BR:
vnl03000
]
Prokaryotic type
Helix-turn-helix
AraC family
D3H41_22330
DNA repair and recombination proteins [BR:
vnl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
D3H41_22330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ada_Zn_binding
AlkA_N
HTH_18
HTH_AraC
HhH-GPD
HTH_3
Motif
Other DBs
NCBI-ProteinID:
QCO88726
LinkDB
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Position
2:complement(1192752..1194119)
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AA seq
455 aa
AA seq
DB search
MFIHPHTSLTFEQCHKARVARDSRFDGRFYVAVKTTGIFCRPICPANLPKEENVEYFADK
TQALQAGYRPCLRCRPDSAPGSWAWKGVETTFQRAISLIDRGELHHHSVSELAERVGISD
RYLRMLFEQYLGMSPKQYAQYQQLMFAKQLLHSSSMSVTDVGFASGFNSTRRFNDAFQKF
LKLTPSQVRRKEFDGAGCNRIALPYRGELNWSHMLDFYRLRAVEGVELVSDESYQRNVFL
DDSKAWFKATKGEGYLELAFEIEDVTKLQNLVSDIRRMFDLDADICTVEQHLEYVAPGLV
SSKGIRIPGVWNAWEAGVRAILGQQVSVKAAIGQLNLLVATLSGESEKRFFPTPNDIANA
DVSFLRMPQSRKETLVRFAQFMQDNSEADPQQWLTLKGIGPWTVSYAQLRGQSQPDCFLD
KDLVVKKAMQRYPSLNTHTAAPWGSYATFHLWNQS
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgtttattcacccccatacttcactgaccttcgagcagtgtcacaaggcgcgagtcgcg
cgagacagtcgttttgatgggcgattttatgtggcggtaaaaacaacgggaatcttttgt
cgtccgatttgcccggcaaatttgcctaaagaagaaaatgttgagtatttcgctgataag
acgcaagcccttcaagcagggtaccgtccgtgtttacgctgtcgacctgatagcgcgcct
ggatcttgggcatggaaaggtgtcgagacgacctttcaacgagcgatttcgttaattgat
agaggggagttgcatcaccattcggtgtctgagttggctgagcgtgttgggatttctgac
cgttacttacgtatgttgtttgagcagtatctaggtatgtcacccaagcagtatgcgcaa
tatcagcaactaatgttcgccaaacagttgcttcactccagctctatgtcggtcaccgac
gtggggtttgcgtcaggttttaacagtacgcgccgctttaacgatgcttttcaaaagttt
ctcaaactaacgccttctcaagtacgccgtaaagagtttgatggtgcgggttgcaatcga
attgccttaccttatcgaggtgagttgaattggtcgcacatgttggacttctatcgtttg
cgagcggttgagggggttgagctggtgagtgatgagagttatcagcgcaacgtttttttg
gatgacagcaaagcctggtttaaagcgacaaaaggtgaaggatacttagaactggcgttt
gaaattgaagacgtaacgaagctgcaaaacttggtgtctgacattcgtcgtatgttcgat
cttgacgctgatatttgtactgttgagcagcatttggagtatgtcgcgcctgggctcgtg
tcgagtaaaggtattcgtattcctggtgtatggaatgcatgggaagcaggggttagagcg
attttaggccagcaggtgtcggttaaagctgcgattggtcaacttaacttattggtggcc
acacttagcggagagtcagaaaaacgttttttcccgactcccaatgatattgcaaacgcc
gacgtgagctttttgcgcatgccgcaaagccgtaaagagacgctagtgcgcttcgcccag
tttatgcaggacaactcagaagctgacccccagcagtggctaactttgaaaggcattgga
ccttggaccgtcagttatgctcaactgcgagggcaatctcaacccgattgctttttagat
aaagacttagtggtgaaaaaggcgatgcagcgttacccatcactgaatacgcacactgcg
gccccttggggaagctacgcgacgtttcacttatggaatcaatcatga
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