Vibrio parahaemolyticus RIMD 2210633: VP2679
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Entry
VP2679 CDS
T00120
Name
(GenBank) ribosomal large subunit pseudouridine synthase A
KO
K06177
tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:
5.4.99.28
5.4.99.29
]
Organism
vpa
Vibrio parahaemolyticus RIMD 2210633
Brite
KEGG Orthology (KO) [BR:
vpa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vpa03009
]
VP2679
03016 Transfer RNA biogenesis [BR:
vpa03016
]
VP2679
Enzymes [BR:
vpa01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.28 tRNA pseudouridine32 synthase
VP2679
5.4.99.29 23S rRNA pseudouridine746 synthase
VP2679
Ribosome biogenesis [BR:
vpa03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
VP2679
Transfer RNA biogenesis [BR:
vpa03016
]
Prokaryotic type
tRNA modification factors
Psudouridine synthases
VP2679
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
Acyl_CoA_thio
Motif
Other DBs
NCBI-ProteinID:
BAC60942
UniProt:
Q87LD3
LinkDB
All DBs
Position
1:complement(2827022..2827774)
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AA seq
250 aa
AA seq
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MAMLEYNPPTDPWTDIVFEDDHILAVNKPSGLLSVPGRLAEHHDSMWSRLQEEYPDIQVV
HRLDMSTSGLMVLAKNKRAESALKKQFQFRLTHKIYYARVWGHVEQEEGEIDLPLICDWP
NRPLQKVCFEDGKPSKTLFQVAKREEQEDGTKTTIVRLLPITGRSHQLRVHMQALGHPIV
GDEFYATEEAKVFSERLELHASELSFYHPKSHWLRSIFVPCDFYPEAEEMIFDYFDPERK
LPDYKTLPRP
NT seq
753 nt
NT seq
+upstream
nt +downstream
nt
atggcaatgcttgagtacaacccaccgactgatccttggaccgacatcgtttttgaggac
gaccatatcttggctgtgaataagccgtctggtttgttatcagttccgggacgtcttgca
gagcaccatgacagcatgtggagtcgtttacaggaagagtacccagatatccaagtcgtg
catcgcttagatatgtcgacgtcgggattgatggtactggctaaaaacaagcgagcagaa
agtgcgttgaaaaagcagttccagttccgcttaacgcataaaatttactacgcacgcgtt
tggggtcatgtcgagcaggaagagggcgaaatcgatctgccattgatctgtgactggccg
aaccgtccgctgcaaaaagtgtgttttgaagatggtaagccatcaaaaactctcttccaa
gtcgcgaagcgagaagaacaagaagacggcacaaagacaaccatcgtacgtctactgcct
attactggccgctcacatcaattgcgtgtgcacatgcaagcgttgggtcaccctattgtt
ggtgacgagttctacgcgaccgaagaagccaaagtcttctctgagcgtttggaactgcac
gcttctgaactgagcttctaccacccgaaaagtcactggctccgcagtatttttgttccg
tgtgacttttacccggaagccgaagagatgatctttgactatttcgatccagagcgtaaa
ttacctgattacaaaacactgccacgcccataa
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