Vibrio parahaemolyticus BB22OP: VPBB_A0556
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Entry
VPBB_A0556 CDS
T02409
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vpb
Vibrio parahaemolyticus BB22OP
Pathway
vpb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VPBB_A0556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpb03019
]
VPBB_A0556
03009 Ribosome biogenesis [BR:
vpb03009
]
VPBB_A0556
Enzymes [BR:
vpb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VPBB_A0556
Messenger RNA biogenesis [BR:
vpb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VPBB_A0556
Ribosome biogenesis [BR:
vpb03009
]
Prokaryotic type
rRNA helicases
VPBB_A0556
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Flavi_DEAD
WSD
Motif
Other DBs
NCBI-ProteinID:
AGB11930
LinkDB
All DBs
Position
2:597789..599720
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AA seq
643 aa
AA seq
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MQDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAF
SLPLLNKLDLDQRKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMR
ALKNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPES
AQRVLFSATMPPMLKNIVERFLRDPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTKSSMEEIQLPLRDQVAEARLNKLAAELEAEKEHKALDKFAELVEKLQTSLEIDPAM
LAAMLLKRQQGKRPLFYIGEDPMVEAIERDKQRRKERREGGREGGRSFNNQDWDTYQLQV
GREQGVQVKDIVGALANELGLGKGSIGAIKLAQGHTFVQLPKAMTSEAASKLSKLRIRQQ
DVGAVVCDFDDFRESRGGRRDGGRRDGGRREGGFRGNREGGNRGGERREGGRREGGFRGN
RDGNREGNREGGERRFDRNRGGDHRGNYRGERGHGRGRRTQDA
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgcaagattctgttattcaattcagcgatttatctctgaatgattctatcctttctgct
ctagacggaatgggtttcgtgtcaccaactccaattcaggctgcggcaatcccacaccta
ttggaaggtgctgacgcgctgggtaaagcacagacgggtacaggtaaaacggcagcattc
tctctgcctcttctaaacaagctagatcttgatcaacgtaaaccacaagcaatcgttctt
gctccaactcgtgagctagcgatccaggttgcggctgaaatgaaaaaccttggtaaaaac
atcaagggtcttaaagttctagaaatctacggtggtgcatctatcgtagatcaaatgcgt
gctcttaaaaacggtgcacacgttgttgttggtactcctggccgtgttcaagaccttatc
aaccgtgaacgtctacatcttgacgaagtgaatactttcgtacttgatgaagcggacgaa
atgctaaacatgggtttcgtggacgacgtaactgcaatcatggagcacgctcctgaatca
gcacaacgcgttctattttctgcaactatgccaccaatgctgaaaaacattgttgagcgc
ttcctacgtgatcctgtaactgttgacgttgctggtaaaaaccacactgtagacaaagtt
caacagcagttctgggtagtgaaaggtgtagagaaagatgaagctatgtctcgtcttctt
gaaactgaagaaactgacgcgtcaatcgtattcgtacgtactcgtcaagacaccgagcgt
ctagctgactggctatctgcacgtggcttcaaagctgctgcactgcacggtgacattcct
cagtctctacgtgagcgtactgttgatcacatcaaacaaggtgttatcgacatcctagtg
gcaactgacgttgttgcacgtggtcttgatgttccacgtatcactcacgtatttaactac
gacatcccattcgatgttgagtcttacatccaccgtatcggtcgtactggccgtgcagga
cgtaaaggtaaagcgatccttctagttcgcactaaccaaatccgtatgcttcgcactatc
gagcgcgtgactaagtcatctatggaagaaatccaacttcctctacgtgaccaagttgca
gaagctcgtctaaacaagctagcggctgaactggaagctgagaaagagcacaaagcacta
gacaagttcgcagagctagtagagaaactacaaacttctctagaaatagaccctgcgatg
cttgctgcaatgcttcttaagcgtcaacaaggtaaacgtcctctgttctacattggcgaa
gacccaatggttgaagcaattgagcgtgacaagcagcgtcgtaaagaacgccgtgaaggt
ggtcgtgaaggcggtcgtagcttcaacaaccaagactgggatacttaccagcttcaagtt
ggtcgcgagcaaggcgttcaagttaaagatatcgttggcgctctagcaaacgaactaggc
ctaggtaaaggttctatcggtgcgatcaagctagcgcaaggtcacacattcgttcagcta
ccaaaagcaatgacttctgaagctgcgagcaagctaagcaaactgcgtatccgtcaacaa
gatgttggtgctgtagtatgtgacttcgacgatttccgcgagtctcgtggtggtcgccgt
gacggtggtcgtcgcgatggcggtcgtcgtgaaggtggtttccgtggtaaccgcgaaggt
ggcaaccgtggtggtgagcgtcgtgaaggcggtcgtcgtgaaggtggcttccgtggtaac
cgtgacggcaaccgcgaaggtaaccgtgaaggtggcgaacgtcgtttcgatcgtaaccgt
ggtggtgatcaccgtggtaactaccgtggcgaacgtggtcacggccgtggccgtcgcact
caagacgcataa
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