Variovorax paradoxus B4: VAPA_1c04460
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Entry
VAPA_1c04460 CDS
T02835
Name
(GenBank) putative extracellular carbohydrate-recognition protein
Organism
vpd
Variovorax paradoxus B4
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RicinB_lectin_2
Big_5
Ricin_B_lectin
Laminin_G_3
PKD_4
PKD
CCP_MauG
Laminin_G_2
Cytochrom_C
RoxA-like_Cyt-c
Y_Y_Y
DUF1924
PKD_3
Cytochrome_CBB3
Laminin_G_1
Pentaxin
Motif
Other DBs
NCBI-ProteinID:
AGU47576
UniProt:
T1X586
LinkDB
All DBs
Position
1:complement(475400..480109)
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AA seq
1569 aa
AA seq
DB search
MKIRYFLMAFLAPLVTLLTHAAITGVSPMTTLNNMATAAAEAVADPLPLQGPGLGNLTYT
SAELFKPVSMITSLAHPLDPAHSSAYESREVPATYPGRKDYGMNAGIMVNGYFLTSFAPD
SGLGPGGFLLYDVSNPRQIQLVKKIYEPEARTKEFRETHSFGTAKIGGKTYVVLPSIYGV
EFWDFTDINDIKQVKKLALPGVNAGDYEDVSWQLWWQAPYLYVASAGRGIFIVDAGDPVN
AVVANRGAGKPNPVPTGELGNFRIGPIFTMGNHMVLTAMESNGGFASLDISDPLNPKVLD
SIVGTTPFYYATCFDGRNLHASTRGSGARMYSYDLSDRSRFVAEDNRLVIDEQLYCATQD
NYVIQGAQTRIHKVDVSNPLNHVEVGRGSILREDDPNFSHSDNGQVAMFGNLVFVGNDHG
SGSGFVVHAVDPDTTRPEVKQVSPANGAKQQALTSRIGLGMTDSIRPESVNANTFIVRAV
GGNTLAGTYSVQLGIINFHPEQPLSPGTSYEVFLPANGVKDYAGNAIGADYKSTFNTGNA
TDINLMHYWTLAGNLSDQIGNNNGTPVSGDAFESIGMSFANRTAGVPLKNDSVATVLGGT
ASLSFYMKTTQAGGPNSWTAPGIFGRDQSGGADDVFWGWLDGNGRIKLSVGNDAGTTSTA
VVNDGSWHHVVLTRDAASGAQAVYVDGVKTTSTGLTGNKGLSNKFQVLGQIQGNAALFKG
TLAEVRVYGRVLTDSEVGTLRGQAIIGDPGIGGGPKIVNGQLVFDPATLGSSGAQFRWNF
GDGTQTAYSTQPRYTYTYTRPGHYTVTLTVRDASGRETFYTYNLTVIVPVTARAPTHTTN
IAGDANSVYSLNPDSGTVAAIDAQTLAKRWEVRVGDEPKTLAVGPDGRIWVTVQGEDKLV
ALSAADGSLSATVPLAYGSGPYGVAFTPDGAKGLLTLESKSVLMSFDPSNGTTTGAVALE
GSLRGIAVSSDAQVAYVTRFKSRMTGGQLHKVNLQSMSAMPTIALPVDTTTVDTESRARG
VANYLSQVVISPDGRRAVLPSKKDNIVRGRFRDGVDLTHDQSVRSILSQVDLQAAAEVFD
EQIDFDDRAPARAALFSPPGDYLFVAQMEGNRVAIVDPYSRAVRGEINASSAPHGLYLDA
ARKRLFVNNFLARSVSVHDVASVLSSESAAAIFLQNVSTVAQEPMAAAALRGKQVFYNAS
DRRMSKDNYISCASCHADAGDDGMVWDFTQRGEGLRRTISLMGRRGAGHGKMHWTANFDE
VQDFENDIRNEFGGTGFLTNADFAATADPLGAPKAGKSAQLDDLAAYLSSLNKYMRSPAR
AADGSLSVEAVRGQTVFNTAQCATCHTGGTFRDGLRHDVGTIQLSSGKGINQPLAGLGFD
TPTLSGTWNTTAFFHNGQAATLQDVLNSGHGNASSLPAPDVVALREYVRSLDTAPAVVTR
IRSDLNPTMCVNIKGGATASGTVAVQWPCGTASNEKFTVTSITGGYVQLVAEHSGLCLAQ
NGTATTNAPVVQLACTAGSTAQWSLVGGTLRNRGSGSCLDVPNGSTTQDTALITWTCNGG
NNQNWTQLP
NT seq
4710 nt
NT seq
+upstream
nt +downstream
nt
atgaagatccggtatttcctgatggcgttcctggccccgctcgtcacattgctgacgcat
gcggccatcaccggggtcagtccgatgacgaccctcaacaacatggcaacggccgcagcc
gaagccgtcgccgacccgctcccgctgcaggggccgggcctgggcaatctcacctataca
tcggcggaactcttcaagccggtgtcgatgatcacgagcctcgcgcacccgctcgatccg
gcgcacagcagcgcctacgagtcgcgcgaggtgcccgccacgtacccgggccgcaaggac
tacggcatgaacgcgggcatcatggtcaacggctacttcctcacttccttcgcgccggac
agcggcctgggcccggggggcttcctgctgtacgacgtgtcgaacccgcgccagatccag
ctggtcaagaagatctacgaacccgaggcccgcaccaaggagttccgcgaaacgcactcc
ttcggcacagcgaagatcggcggcaagacgtacgtggtgttgcccagcatctacggcgtc
gagttctgggacttcaccgacatcaatgacatcaagcaggtgaagaagctggcgctgccc
ggcgtcaacgccggcgactacgaagacgtcagctggcagctctggtggcaggcgccctac
ctgtacgtggcctcggcgggccgcggcatcttcatcgtcgatgccggggaccccgtgaac
gccgtggttgcgaaccgcggcgccggcaagcccaacccggtgcccacgggcgaactcggc
aacttccggatcggtccgatcttcaccatgggcaaccacatggtgctgaccgcgatggaa
agcaacggcggattcgcgagcctggatatctccgatccgctcaaccccaaggtgctcgat
tccatcgtgggcaccacgccgttctactacgccacctgcttcgacggcaggaacctgcac
gcctcgacgcgcggcagcggcgccaggatgtacagctacgacctgagcgaccgctcgcgc
ttcgtggccgaggacaaccggctggtcatcgacgaacagctgtattgcgccacgcaggac
aactatgtgatccagggcgcgcaaacgcgcatccacaaggtcgacgtgagcaatccgctc
aatcacgtggaggtgggccgcggcagcatcctgcgcgaggacgacccgaacttctcgcat
tcggacaacggccaggtcgcgatgttcggcaacctcgtcttcgtgggcaacgaccacggc
tcgggcagcggcttcgtcgtgcatgcggtggaccccgacaccaccagacctgaagtgaaa
caggtttcgccggccaacggcgcgaagcagcaggcgctgacctcgcgcatcggcctgggc
atgaccgacagcatccggcccgagagcgtcaacgccaacaccttcatcgtgcgggcggtg
ggcggcaacacgctggcgggcacctacagcgtgcagctgggcatcatcaacttccacccc
gagcagccgctgtcgccgggcaccagctatgaagtgttcctgcccgccaacggcgtgaag
gactatgcgggcaacgccatcggcgcggactacaagtcgaccttcaacaccggcaacgcg
accgacatcaacctgatgcactactggacgctggcgggcaacctctccgaccagatcggc
aacaacaacggcacgccggtctcgggcgacgcgttcgaaagcatcggcatgagcttcgcg
aaccgcaccgccggtgtgccgctgaagaacgattcggtggccaccgtgctcggcggcacc
gcctcgctgagcttctacatgaagaccacgcaggcgggcggcccgaactcctggaccgcg
cccggcatcttcgggcgcgaccagtcgggcggcgcggacgacgtgttctggggctggctc
gacggcaacgggcgcatcaagctgtcggtgggcaatgacgccggcaccacctccacggcg
gtggtgaacgacggcagctggcaccacgtggtgttgacgcgcgacgccgcctcgggtgcg
caggcggtatacgtcgatggcgtgaagaccacgtccaccgggctcacgggcaacaagggc
ctgtcgaacaagttccaggtgctgggccagatccagggcaacgctgcgctcttcaagggc
acgctggcggaggtgcgcgtctacggccgcgtgctcaccgacagcgaggtgggcacgctg
cgtgggcaggccatcatcggcgacccgggcattggcggcgggccgaagatcgtcaacggc
cagctggtcttcgacccggccacgctcggcagcagcggcgcgcagttccgctggaacttc
ggtgacggcacgcaaacggcctactccacccagccgcgctacacctatacctacacacgg
ccggggcactacaccgtgacgctgacggtgcgcgacgcgagcggccgcgagaccttctac
acctacaacctcacggtgatcgtcccggtcacggcgcgggcgcccacgcacacgaccaac
atcgcaggcgatgcgaattcggtctactcgctcaaccccgacagcggcacggtcgccgcc
atcgatgcgcagaccctggcaaagcgctgggaagtacgcgtgggcgacgagccgaagacg
ctggccgtgggccccgatgggcgcatctgggtcacggtgcagggcgaggacaagctggtg
gcgctcagcgcggccgacggcagcctctcggccaccgtgccgctggcctacggcagcggc
ccctacggcgtggccttcacgcctgacggcgcgaagggcctgctgacgctggagagcaag
tcggtgctgatgagtttcgacccgagcaacggcaccaccaccggcgcggtcgccctcgaa
ggcagcctgcgcggcattgccgtgagctccgacgcgcaggtggcctacgtcacccgcttc
aagtcaaggatgacgggcggccagctgcacaaggtgaacctgcagagcatgagcgcgatg
cccacgatcgcgctgccggtggacaccaccacggtggacaccgagagccgcgcgcgcggc
gtggccaactacctgagccaagtggtgatctcgcccgacggcaggcgcgcggtgctgcct
tcgaagaaggacaacatcgtgcgcggccgcttccgtgacggtgtggacctgacgcacgac
cagagcgtgcgctccatcctctcgcaggtcgacctgcaggcggccgcagaagtgttcgac
gagcagatcgacttcgacgaccgcgcaccggcgcgcgcggcgctgttctctccgcccggg
gactacctcttcgtggcgcagatggaaggcaaccgcgtcgccatcgtcgacccgtacagc
cgggcggtgcgcggcgagatcaacgcgagcagcgcgccgcacggcctctacctggacgca
gcgcgcaagcggctgttcgtcaacaactttctcgcgcgctcggtgtcggtgcacgacgtg
gcctcggtgctgtcgtcggaatccgccgccgcgatctttctccagaacgtctcgacggtg
gcgcaggagcccatggcggccgcggccttgcgcggcaagcaggtgttctacaacgcgtcc
gaccggcgcatgagcaaggacaactacatctcctgcgcgagctgccacgcggacgccggc
gacgacggcatggtgtgggacttcacgcagcgcggcgaaggcttgcgccgcaccatcagc
ctcatgggccggcgcggcgcgggccacggcaagatgcactggaccgccaacttcgacgaa
gtgcaggacttcgagaatgacatccgcaacgaattcggcggcaccggcttcctgacgaat
gcggatttcgccgccacggccgaccccttgggcgcgcccaaggccggcaagagtgcacaa
ctcgacgatctcgcggcctacctgagttcgctgaacaagtacatgcgcagcccggcgcgt
gcggcggacggcagcctgagcgtcgaagcggtgcgaggccagacggtgttcaacacggca
cagtgcgccacctgccacaccggaggcactttccgcgacggtctgcggcacgacgtgggc
acgatccagctctcctccggcaagggcatcaaccagccgctggcgggcctgggcttcgac
acgccgacgctctcgggcacctggaacaccaccgccttcttccacaacgggcaggcggcc
accttgcaggacgtgctgaacagcggccacggcaatgcatcgagcctgccggcgccggat
gtggtggcgctgcgcgagtacgtgcgctcgctggacacggccccggcggtggtcacgcgg
atccgctcggacctcaacccgacgatgtgcgtgaacatcaagggcggggcgaccgcaagc
ggcaccgtggcggtgcagtggccctgcggcaccgcgagcaacgagaagttcacggtgacg
tcgatcaccggcggctatgtgcagctcgtggccgagcacagcggcctgtgcctggcgcag
aacggcaccgcgacgaccaacgcgccggtggtgcagctggcatgcacggcgggcagcacg
gcgcagtggagcctggtcggcggcaccctccgcaaccgcggctcgggctcgtgcctcgac
gtgcccaatggctcgacgacgcaggacacggcgctgatcacgtggacctgcaatgggggc
aacaaccagaactggacgcagctgccttag
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