KEGG   Variovorax paradoxus B4: VAPA_1c07340Help
Entry
VAPA_1c07340      CDS       T02835                                 

Gene name
tuf1
Definition
(GenBank) elongation factor Tuf
  KO
K02358  elongation factor Tu
Organism
vpd  Variovorax paradoxus B4
Brite
KEGG Orthology (KO) [BR:vpd00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03012 Translation factors [BR:vpd03012]
    VAPA_1c07340 (tuf1)
   03029 Mitochondrial biogenesis [BR:vpd03029]
    VAPA_1c07340 (tuf1)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:vpd04147]
    VAPA_1c07340 (tuf1)
Translation factors [BR:vpd03012]
 Eukaryotic Type
  Elongation factors
   VAPA_1c07340 (tuf1)
 Prokaryotic Type
   VAPA_1c07340 (tuf1)
Mitochondrial biogenesis [BR:vpd03029]
 Mitochondrial DNA transcription, translation, and replication factors
  Mitochondrial transcription and translation factors
   Mitochondrial translation factors
    VAPA_1c07340 (tuf1)
Exosome [BR:vpd04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   VAPA_1c07340 (tuf1)
  Exosomal proteins of breast cancer cells
   VAPA_1c07340 (tuf1)
  Exosomal proteins of colorectal cancer cells
   VAPA_1c07340 (tuf1)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: GTP_EFTU GTP_EFTU_D3 GTP_EFTU_D2 MMR_HSR1 RsgA_GTPase cobW
Motif
Other DBs
NCBI-ProteinID: AGU47860
UniProt: T1XHY7
LinkDB All DBs
Position
1:799505..800698
Genome map
AA seq 397 aa AA seqDB search
MAKGKFTRTKPHVNVGTIGHVDHGKTTLTAAIATVLSAKFGGEAKAYDQIDAAPEEKARG
ITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHI
LLARQVGVGYIIVFLNKCDMVDDAELLELVEMEVRELLDKYEFPGDDTPIIHGSAKLALE
GDKGPLGEQAIMKLADALDTYIPTPERAVDGTFLMPVEDVFSISGRGTVVTGAVERGVIK
VGEEIEIVGIRPTVKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREEVERGQVLCKPGS
IKPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGAIELPKDKEMVMPGDNVS
ITVKLINPIAMEEGLRFAIREGGRTVGSGVVAKILDI
NT seq 1194 nt NT seq  +upstreamnt  +downstreamnt
atggcaaaaggtaaattcacccgcaccaagccgcacgtgaacgtgggcacgatcggtcac
gttgaccacggcaagaccacgctgacggcggcgattgccaccgttctgtcggccaagttc
ggcggcgaagccaaggcctacgaccagatcgacgcggcgcccgaagaaaaggcccgcggc
atcaccatcaacaccgcccacgtcgagtacgaaacggccaaccgccactacgcccacgtc
gactgccccggccacgccgactacgtcaagaacatgatcaccggtgccgcccagatggac
ggcgccatccttgtgtgctcggccgccgacggccccatgccccagacccgcgagcacatc
ctgctggcgcgccaggtgggtgtgggctacatcatcgtgttcctgaacaagtgcgacatg
gtggacgacgccgaactgctcgagctcgtcgaaatggaggtgcgcgaactgctcgacaag
tacgagttcccgggcgacgacacccccatcatccacggctcggccaagctcgccctcgaa
ggcgacaagggcccgctgggcgagcaggccatcatgaagctggccgacgccctggacacc
tacatcccgacgcccgagcgcgccgtggacggcaccttcctgatgcccgtggaagacgtg
ttctcgatctccggccgcggcaccgtggtgaccggtgctgtcgagcgtggcgtgatcaag
gttggcgaggaaatcgagatcgtcggtatccgtccgaccgtcaagaccacctgcaccggc
gtggaaatgttccgcaagctgctggaccagggccaggctggcgacaacgtcggcgtgctg
ctgcgcggcaccaagcgcgaagaagtcgagcgcggccaggtgctgtgcaagcccggctcg
atcaagccgcacacgcacttcaccgccgaggtgtacgtgctgtccaaggacgaaggcggg
cgtcacacgccgttcttcaacaactaccgtccgcagttctacttccgcacgacggacgtg
accggcgcgatcgagctgcccaaggacaaggaaatggtcatgcccggcgacaacgtcagc
atcaccgtgaagctgatcaacccgatcgcgatggaagaaggcctgcgcttcgccatccgc
gaaggcggccgcaccgtgggttcgggcgtcgtggcaaagatcctcgacatctaa

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