Variovorax paradoxus B4: VAPA_1c14480
Help
Entry
VAPA_1c14480 CDS
T02835
Name
(GenBank) putative RNA polymerase sigma factor, sigma-70 family
KO
K03088
RNA polymerase sigma-70 factor, ECF subfamily
Organism
vpd
Variovorax paradoxus B4
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vpd03021
]
VAPA_1c14480
Transcription machinery [BR:
vpd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VAPA_1c14480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_17
HTH_23
FEZ
Motif
Other DBs
NCBI-ProteinID:
AGU48560
UniProt:
T1X8S6
LinkDB
All DBs
Position
1:complement(1574702..1575295)
Genome browser
AA seq
197 aa
AA seq
DB search
MPHNPRMTAPSPDAELISLIDRIGRRDEVALRLLYDRTAPRLMGLAMRVVRQREWAEDVL
QESFMTVWRAAGDYRGTLSPPLAWLGLIVRSRSLDLLRRRTADRAQLTQEFDELMAETIE
SDAPSPADTADASEQAWALHQCLSQLEARQREVVSLAYLRELSHGELAEQLKLPLGTVKT
WIRRGLEKLRLCMGRFA
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
atgccccacaatccgcgcatgacagcacccagccccgacgccgaactgatctcgctgatc
gatcgcatcgggcgccgcgacgaggtcgcgctgcgcctgctctacgaccggacggcgccc
aggctcatgggcctggcgatgcgtgtcgtgcggcagcgcgagtgggccgaggacgtgctg
caggaatcgttcatgacggtctggcgcgcggccggcgactaccgcggcacgctgagcccg
ccgctcgcctggctggggctgatcgtgcgcagccgctcgctcgacctgctgcgccgccgc
accgccgatcgcgcccagctcacccaggagttcgacgagctgatggccgagacgatcgaa
tccgatgcacccagcccggccgacacggccgacgccagcgagcaggcctgggcgctgcac
cagtgcctgagccagctcgaggcccgccagcgcgaggtcgtgagcctggcctacctgcgc
gagctgagccacggcgaactggccgagcagctgaagctgccgctgggcacggtcaagacc
tggatccggcgcgggctcgaaaaactgcgcctgtgcatgggacgcttcgcctag
DBGET
integrated database retrieval system