Variovorax paradoxus B4: VAPA_1c38580
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Entry
VAPA_1c38580 CDS
T02835
Name
(GenBank) RNA polymerase sigma factor, sigma-70 family
Organism
vpd
Variovorax paradoxus B4
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r4
Sigma70_r2
HTH_23
Sigma70_ECF
HTH_20
HTH_40
GerE
HTH_10
LexA_DNA_bind
HTH_11
Phage_antitermQ
VMAP-M18
HTH_24
Motif
Other DBs
NCBI-ProteinID:
AGU50940
UniProt:
T1XFP6
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Position
1:4072277..4072897
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AA seq
206 aa
AA seq
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MRDIVQELVAHYADLRRQLTRDLRDPHYAADIAQSSFERVYAHALKMNKDIRINDAAPDD
TQGTGGIESPRALLFRVARNLCVDDARRRKVAQDWVSTHFNSGSRQVVPSCEFIASQQQV
LARVVETLETLPPRRREVFLLFRAYGHTRAEIAQQLNITEMAVAKHLLRAAIDCSRVFAR
LRLELVEQPVVSMRPGFDATFAEDFA
NT seq
621 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgacatcgtccaggaactggtagctcactatgcggacttgcgccggcagctgaca
cgcgacctgcgcgacccgcactacgcggcggacatcgcgcaatcgagcttcgagcgcgtg
tatgcccacgcgctcaagatgaacaaggacatccgcatcaatgatgcggcgccggacgac
acgcaaggcaccggcggcatcgagtcgccccgcgccctgctgtttcgcgtggcgcgcaac
ctgtgcgtggacgatgcgcgccgccgcaaggtggcacaggactgggtcagcacgcatttc
aactcgggctcgcgccaggtggtgccgtcttgcgaattcatcgcgtcccagcagcaggtg
ctggcgcgcgtggtcgagacgcttgaaacgctgccaccccgccggcgcgaagtgttcctg
ctgttccgggcctacggacacacgcgcgccgaaatcgcgcagcaactgaacatcaccgag
atggcggtcgccaagcacctgctgcgcgccgccatcgactgctcgcgcgtgttcgcccgg
ctgcgtttggagctggtcgagcagccggtcgtctcgatgcgcccgggcttcgacgcaacg
ttcgccgaagacttcgcctga
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