Variovorax paradoxus B4: VAPA_1c50340
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Entry
VAPA_1c50340 CDS
T02835
Name
(GenBank) putative DNA ligase
Organism
vpd
Variovorax paradoxus B4
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
AGU52088
UniProt:
T1XHT1
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Position
1:complement(5308728..5310383)
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AA seq
551 aa
AA seq
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MKDFAALYRELDASTSSLAKQAALQRYLREADPADAAWAVYFLAGGKPRQLVPTKLLRLL
AQEAAGLPEWLFDESYEVVGDLAETIALLLPPPTEAHDLGLARWVEEHLLPLREAGKAAP
DELPARLRAQWRQLAAEERLVYFKLITGAFRVGVSKLQVTQALAGVGGIDPKRVAQRLMG
YTHIGGRPRAEDYRALIAPESGAEQVQKTSGQPYPFFLAHAFNLPLEQFDAVLGPPAGWI
VEWKWDGIRAQLVKRAGVAWLWSRGEELVTERFPELAVLGDALPDGTVLDGEIAVWRDDR
VQPFAELQRRIGRKTLGAKLLREIPVVLLAYDVLEWEGRDLRALPQSQRRLLLDELVTRM
PHPSLLPSPMLTGIEWSDFARQREAARSMGVEGMMLKRRDAQYGVGRTKDVGVWWKWKID
PLSIDAVLVYAQRGHGRRASLYSDYTFAVWDGPPEQEGRKLVPFAKAYSGLTDAEMARVD
AIIRKTTVESFGPVKSVKPTLVFELGFEGIARSARHKSGIAVRFPRMLRWREDKPVAEAD
TLQTLAALLPS
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatttcgcggcgctctaccgcgagctcgacgcgagcacctcgagccttgccaag
caggccgcgctgcagcgctacctgcgcgaggccgatccggccgatgcggcgtgggccgtg
tacttcctggccggcggcaagccgcgccagctcgtgcccaccaagctgctgcggctgctc
gcgcaggaagcggcgggcctgcccgaatggctgttcgacgagagctacgaggtggtcggc
gacctggccgaaaccatcgcgctgctgctgccgccgcccaccgaggcgcacgacctcggc
ctggcgcgctgggtcgaggagcacctgctgccgctgcgggaggccggcaaggcggcgccc
gacgaactgcccgcgcggctgcgcgcgcagtggcgccagctcgcggccgaagagcggctg
gtgtacttcaagctcatcaccggcgccttccgcgtgggcgtgtcgaagctgcaggtcacg
caggcgctcgcgggcgtgggcggcatcgatcccaagcgcgtggcgcagcgcctcatgggc
tacacccacatcggcggccgcccgcgggcggaagactaccgcgcgctgatcgcgccggag
tcgggcgcggagcaggtacagaagaccagcgggcagccctacccgttctttcttgcgcat
gcgttcaacctgccgctcgagcagttcgatgccgtgctcggtccgccggccggctggatc
gtcgaatggaagtgggacggcatccgcgcgcagctggtcaagcgcgcgggcgtcgcctgg
ctgtggtcgcgcggcgaggaactggtgaccgagcgctttcccgagctggccgtgctgggc
gatgcgctgcccgacggcacggtgctcgacggcgagattgccgtctggcgcgacgacagg
gtgcagcccttcgcggagctgcagaggcgcatcggccgcaagacgctgggcgcgaagctg
ctgcgcgagatcccggtggtgctgctggcctacgacgtcctcgaatgggaagggcgcgac
ctgcgcgcgctgccgcagtcgcagcgccggctgctgctcgacgaactcgtcacgcgcatg
ccgcacccgtcgctgctgccgagcccgatgctcaccggcatcgaatggagcgacttcgca
cgccagcgcgaagcggcgcgcagcatgggcgtggaaggcatgatgctcaagcgccgcgac
gcgcagtacggcgtgggccgcaccaaggacgtgggcgtgtggtggaagtggaagatcgat
ccgctcagcatcgacgccgtgcttgtctacgcacagcgcggccacggccggcgcgcgagc
ctctacagcgactacaccttcgccgtctgggacggcccgcccgagcaggaaggccgcaag
ctcgtgccctttgccaaggcctattcgggcctcaccgacgccgagatggcgcgcgtggac
gcgatcatccgcaagaccaccgtcgagagcttcggcccggtgaagagcgtcaagcccacg
ctggtgttcgagctgggtttcgaaggcatcgcgcgcagcgcgcgccacaagagcggcatc
gcggtgcgctttccgcgcatgctgcgctggcgcgaagacaagccggtggcggaagccgac
accctgcagacgctggccgcgctgctgccgtcatga
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