KEGG   Variovorax paradoxus B4: VAPA_2c13220
Entry
VAPA_2c13220      CDS       T02835                                 
Name
(GenBank) type IV secretion system VirD4-like protein
  KO
K03205  type IV secretion system protein VirD4 [EC:7.4.2.8]
Organism
vpd  Variovorax paradoxus B4
Pathway
vpd03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:vpd00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    VAPA_2c13220
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:vpd02044]
    VAPA_2c13220
Enzymes [BR:vpd01000]
 7. Translocases
  7.4  Catalysing the translocation of amino acids and peptides
   7.4.2  Linked to the hydrolysis of a nucleoside triphosphate
    7.4.2.8  protein-secreting ATPase
     VAPA_2c13220
Secretion system [BR:vpd02044]
 Type IV secretion system
  Conjugal DNA-protein transfer (VirB/D) protein
   VAPA_2c13220
SSDB
Motif
Pfam: T4SS-DNA_transf TrwB_AAD_bind TraG-D_C ABA_GPCR
Other DBs
NCBI-ProteinID: AGU53874
UniProt: T1XNJ3
LinkDB
Position
2:complement(1341143..1343098)
AA seq 651 aa
MTLAPRSEGLPSPFRIAVALLVAALVGMYVAGHAFLIAMNLPPQRATLLTLHEYWQVYGE
RPDVRRVLIASLAGSQGLMLGLVGIAMLPRRRPLHGDARFASRREIARSGLLNEHGIILG
RLGNRYLVLPGQQGVALEAPPRSGKGIGVVIPNLLNWPGSAIVSDIKGENFTRTAGFRAA
HGQQVHLFDPLSERERSARWNPLGYVSETPYRCIDDLQRIGTMLFPDPQAGDPFWTSSAR
SLFLGIALYLFETKGATRTLGEVLRQGMASDAEGFQKHWKRVIDACERTGYPLSQEAVQS
LYDVIDLAPTTASSIRKTFTSRLDLWLNPMIDAATSANDFDLRELRKRPISIYVQINPDN
IARLQPLLNLFFQQAIGLQTRELPENNPQLRHQVLLMLDEFPALGRIPVIADSTAFLPGY
DVRTVIIVQSNSQLIEKYGIEGAKSIRKMLAARIVFPPKEYEDAEAISRELGTCTVRQKN
VSRPMWGGAGKEPTVSISEQPRRLLLPQEVKELGSDRMILFYEGLRPVLAHRILYFRDRF
FAPRELPPPLVPKLDVHKSSRVVATAPAATPDDRKDTPDTHPGSITNATPQGGAFALTNR
QADTVAGDVLNDDLKLDDFSFDFGDVEIPIEKLSDEDIKRHADEFMAQILD
NT seq 1956 nt   +upstreamnt  +downstreamnt
atgaccctggcaccaagatccgaaggcttgcctagccccttcagaatcgcggtcgcgctg
ctggtggcggcgctggtcggcatgtacgtcgccggccatgcgttcctgatcgcgatgaat
ctgccgccacagcgcgccacgctgctgacccttcacgagtactggcaggtctacggcgaa
cggccggacgtgcgccgtgtcctcattgcgtcgctggccggctcccaggggctgatgctc
ggtttggtcggaattgccatgctgcctcgccgccggccgctgcatggcgatgcccgattc
gcgagccgtcgcgagatcgcgcgatcgggcctcctgaacgagcacggcatcatcctcggg
cggctcggcaatcgctacctggtgcttcccggccagcagggcgtcgcactcgaggcgccg
ccgcgcagtggcaagggcatcggcgtggtcatccccaatctgctgaactggcccggctcg
gccatcgtcagcgacatcaagggcgagaacttcacgcgcaccgccggcttccgtgcggcc
catgggcagcaggtgcacctgttcgatcccttgtccgagcgcgagcgctcggcacgctgg
aacccgctcggctacgtctccgagacgccctaccgctgcatcgacgatctgcagcgcatc
ggcacgatgctctttcccgatccacaggccggtgaccccttctggacctcctcggcccga
tctctgttcctgggcatcgccctctatctcttcgagaccaagggtgccacgcgcaccttg
ggcgaggtcctgcgccagggcatggccagcgatgccgagggcttccagaagcactggaag
cgcgtgatcgacgcctgcgagcgcacggggtaccccttgtcgcaggaagcggtgcagagc
ctctacgacgtgatcgacctggcgccgaccaccgcctccagcatccgcaagaccttcacc
agccgcctggacctgtggctcaacccgatgatcgatgccgccacctcggccaacgatttc
gacctgagggaactgcgcaagcgcccgatctcgatctatgtgcagatcaaccccgacaac
atcgcccggctgcagccgctcctgaacctgttcttccagcaggcgatcggcctgcaaacg
cgggaactccccgagaacaatccgcagcttcgccaccaggtgctcctgatgctcgacgaa
tttccggcgctcggccgcattcccgtcatcgccgactccacggcctttctgcccgggtac
gacgtgcgcaccgtgatcatcgtccagtccaattcgcagctgatcgagaagtacggcatc
gagggcgccaagtcgatccgcaagatgctggccgcacgcatcgtgttcccgcccaaggaa
tacgaggacgccgaggccatctcgcgcgaactgggaacctgcaccgtccggcagaagaac
gtcagccgcccgatgtgggggggcgcgggcaaggagccgaccgtgagcatcagcgagcaa
ccgcgccgtctgctgctgccccaggaggtcaaggaactgggatcggaccgcatgatcctg
ttctacgaaggcctgcggccggtgctggcgcaccgcatcctctactttcgcgacaggttc
ttcgccccacgcgaactgccgcccccactggtgccgaagctggacgtgcacaagtccagc
cgcgtcgtcgcaaccgctccggcggcgacgcccgacgacaggaaagacacacctgacacg
catcccggatccatcaccaacgccacaccacagggcggtgccttcgcactgacgaacagg
caggccgataccgtggccggcgatgtactgaacgacgacctgaaactggacgacttctcg
ttcgacttcggcgacgtggagattcccatcgagaagctcagtgacgaggacatcaagcgc
cacgccgatgagttcatggcgcagatcctggactga

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