KEGG   Variovorax paradoxus EPS: Varpa_0532Help
Entry
Varpa_0532        CDS       T01392                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
vpe  Variovorax paradoxus EPS
Pathway
vpe03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:vpe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Varpa_0532
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vpe03400]
    Varpa_0532
Enzymes [BR:vpe01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Varpa_0532
DNA repair and recombination proteins [BR:vpe03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Varpa_0532
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ADU34753
UniProt: E6V5E7
LinkDB All DBs
Position
573184..575793
Genome map
AA seq 869 aa AA seqDB search
MGTTRTASTARKALSRYHGKRDFSRTPEPKEGGRAGQGVLSFVIQKHHASRLHYDFRLEL
DGTLKSWAVPKGPCLDPTVKRMAVHVEDHPISYADFEGTIPPKQYGAGTVIVWDRGDWLP
EGGSEADARKALAAGKLKFELRGEKLKGHWTLVRMRGKGDEKQEPWLLIKERDDAARDLA
DYDVLEEQPASVLTGRGLDEVDSPPKKAAPAKKAAAKKPEKKAAKKEVKKEVKKKAALPA
TLQPQLAVLAASPPSSPDDWLYELKFDGYRLLARIDKGKVRCFTRNGHDWTDKLPVIAKA
LAKLPTDSAWLDGEITVEGGNGAPDFQALQNAFDRGATSSIVYWLFDAPFLDGQDLRDEP
VEERRAHLARLLGKRPPATLRLSEAFDASPRDLLASSARIGFEGIVGKRKGSPYVSRRSA
DWIKLKNQQRQEFVIGGYTAPKGSRSGFGALLLGVHDDKGRLRYCGNVGTGFNADRLADI
KARLDRLATDDCPFKPMPDGANAKAQWVKPTLVAEVSFGEWTREDRVRQAVFQGLRTDKP
ARGIVRERAAPSETSPETSTEASTDTPAKKQGARKSMALKITHADRVIDAKSGITKGELA
AYYDAVGTLMLPHLRGRPVSLVRAPDGVGGELFFQKHIQNREIPGVNLLDPALDPGHEPL
LQIDSKTGLIGAAQMNVIELHTWNATSRAIDRPDRMTFDLDPGEGVGWPQIQEATLLVRT
LLDELGLPSFLKTSGGKGMHVVVPIRRQYGWDEVKGFSQAVVVHLAKTIPDRFVAKSGPR
NRVGKVFVDYLRNGFGATTVSAWSARSRPGLGVSVPVAWEELPALTGAAQWTVANVAERL
ATGNKPWAAMERSRKGIAAAMKMLDYKPA
NT seq 2610 nt NT seq  +upstreamnt  +downstreamnt
atgggaacaacccgcaccgcatcgaccgcgcgcaaggcgctttcccgctaccacggcaag
cgcgatttctcgcgcacgccggagcccaaggagggcggccgcgcgggccagggcgtgctc
tccttcgtcatccagaagcaccacgcgagccgcctgcactacgacttccggctcgaactc
gacggcacgctcaagagctgggccgtgccgaaaggaccgtgcctcgatccgacggtcaag
cgcatggcggtgcatgtcgaggaccatccgatttcgtatgcggacttcgagggcaccatt
ccgccgaagcaatacggtgccggcaccgtcatcgtgtgggaccgaggcgactggctgccg
gaggggggtagcgaagccgacgcgcgcaaggcgctcgcggccggcaagctcaagttcgag
ctgcgcggcgaaaagctcaagggccactggacgctggtgcgcatgcgcggcaagggcgac
gagaagcaagagccgtggctgctcatcaaggagcgcgacgacgcggcgcgcgatcttgcc
gattacgacgtgctcgaagagcaacccgcgagcgtgctgaccggccgcggcttggacgag
gtggacagtccgccgaagaaggcggcgcccgccaaaaaggccgcggcgaagaagcccgag
aagaaagcggcaaagaaggaggtcaagaaggaggtcaagaagaaggccgccttgcccgcc
acccttcaaccgcagctcgcggtcctcgccgcttcgcctccgtcatcgcccgacgactgg
ctctacgaactcaagttcgacggctaccgcctgctcgcgcgcatcgacaagggcaaggtg
cgctgcttcacccgcaacggccatgactggaccgacaagctgcccgtcatcgccaaggcc
ctcgccaagctacccaccgattcggcctggctcgacggcgagatcaccgtggaagggggc
aacggcgcgcccgatttccaggcgctgcagaacgccttcgaccgcggtgcgacttcatcc
atcgtctactggctgttcgatgcgccctttctcgatgggcaggacctgcgcgacgagccg
gtcgaggagcgacgtgcgcacctggcccgcctgctcggcaagcggccaccggcgacgctg
cgcctgagcgaggccttcgatgcgtcgccgcgcgacctgcttgcgtcgtccgcgcgcatc
ggcttcgagggcatcgtcggcaagcggaagggctcgccgtacgtgtcgcgccgctcggcc
gactggatcaagctcaagaaccagcagcgccaggagttcgtgatcggcggctacaccgcg
cccaagggttcgcgctcggggttcggcgcgctgctgctgggcgtgcacgacgacaagggg
cggctgcgctattgcggcaacgtgggcaccggattcaacgcggatcggctcgccgacatc
aaggcgcggctggacaggctggccaccgacgactgtcccttcaagcccatgccggacggc
gcgaatgcgaaggcgcaatgggtcaagcccacgctggtggccgaagtctctttcggcgaa
tggacgcgcgaagaccgcgtgcgccaggcggtattccaggggctgcgcaccgacaagccc
gcgcgcggcatcgtgcgcgaacgggcggcgccttccgagacatcgcccgagacatcaacc
gaagcatcaaccgacacacccgcgaagaagcaaggagcaaggaaatccatggcgctgaag
atcacccacgccgaccgcgtgatcgatgcgaagagcggcatcaccaagggcgaactcgcc
gcctactacgacgcggtgggcacgctcatgctgccgcacctgcgcgggcggccggtgtcg
ctggtgcgcgcgcccgacggcgtgggcggcgagctgttcttccagaagcacatccagaac
cgcgagatacccggcgtcaacctgctggaccccgcgctcgatccgggccacgagccgctg
ctgcagatcgacagcaagaccgggctcatcggcgccgcgcagatgaacgtcatcgagctg
cacacctggaacgccacctcgcgcgccatcgaccggcccgaccgcatgaccttcgacctg
gaccccggcgaaggcgtgggctggccgcagatccaggaagcgacgctgctggtgcgcacg
ctgctcgacgaactgggcctgccgtcgttcctgaagaccagcggcggcaaggggatgcat
gtggtggtgccgatccgccggcagtacggctgggacgaggtcaaggggttctcgcaggcc
gtggtggtgcacctggcgaagacgattccggaccgcttcgtcgccaagagcgggccgcgc
aaccgcgtggggaaggtgttcgtggattacctgcgcaacggcttcggcgcgaccacggtc
agcgcgtggtcggcgcggtcgcgcccggggctgggcgtgtcggtgccggtggcgtgggag
gagttgcccgccctgaccggcgccgcgcaatggaccgtcgccaacgtggccgagcgcctc
gccacgggcaacaagccgtgggcggcgatggagcgcagccgaaaaggcatcgccgcggcg
atgaagatgctcgactacaaaccggcgtag

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