Variovorax paradoxus EPS: Varpa_5426
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Entry
Varpa_5426 CDS
T01392
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain acyl-CoA synthetase [EC:
6.2.1.3
]
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe00061
Fatty acid biosynthesis
vpe00071
Fatty acid degradation
vpe01100
Metabolic pathways
vpe01212
Fatty acid metabolism
vpe02024
Quorum sensing
Module
vpe_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Varpa_5426
00071 Fatty acid degradation
Varpa_5426
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Varpa_5426
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
vpe01004
]
Varpa_5426
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vpe04147
]
Varpa_5426
Enzymes [BR:
vpe01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Varpa_5426
Lipid biosynthesis proteins [BR:
vpe01004
]
Acyl-CoA synthetase
Long/very long chain acyl-CoA synthetase
Varpa_5426
Exosome [BR:
vpe04147
]
Exosomal proteins
Exosomal proteins of breast milk
Varpa_5426
Exosomal proteins of breast cancer cells
Varpa_5426
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-ProteinID:
ADU39581
UniProt:
E6V8F7
LinkDB
All DBs
Position
5892909..5894600
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AA seq
563 aa
AA seq
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MQTSARQNYPAGVPEEINPEQYRSLPHMFEEAFGRYKDRPFSVCMERWMTYGELDVLSKA
LGAWLQSKGLEPGARVAIMLPNIPQFAVTMCGILRAGYTCVNVNPLYTARELEHQLKDSG
ATAIVILENFASTLEQVIERTPVKHVVMTSMGDLLGGLYGAWITIAVRHLAKMVPPYKLP
LSDGRTVTPFTQAISEGRGRTLAADQSTLDSIAFLQYTGGTTGLSKGAVLTHRNIVAATL
QAEAWFTPALSRAGDLAKVNSIAALPLYHIFALTLCLLVIRQGSHMTLIPNPRDFDKFIA
VLKKRPFHMLPAVNTLFNALLMHPQFKTIDFSTLFVSQAGGMAASEGTARKWFEATGCPM
IEGWGMSETCAIGTNNPVSNTKFTGTIGLPLPSIEIAIKDDEGNSVPVGQSGELCIKGPN
VMTGYYNQPAETAAAFTADGFMRTGDIAVMQEDGYSRIVDRKKDMILVSGFNVFPNELEN
VISLCPGVVECAAVGVPDEKQGEAIKVFVVRRDPNLTEDAVLQYCNGQLTGYKRPKHIEF
RDSLPKTNVGKILRRELRTSAGA
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgcagacatccgcgcgacaaaactatccagccggcgtgcccgaggaaatcaaccccgag
caataccggtccctgccccacatgttcgaggaggcgttcggtcgctacaaggaccggccg
ttctcggtttgcatggagcgctggatgacttacggcgagctcgacgtgctgtcgaaggcg
ctgggcgcctggctgcagtcgaaggggctcgagccgggtgcgcgcgtggcgatcatgctg
cccaacattccgcagttcgcagtcaccatgtgcggcatcctgcgcgcgggctacacctgc
gtgaacgtgaatccgctctacacggcgcgcgaactggagcatcagctcaaggactccggc
gcgacggcgatcgtgattctcgagaacttcgcatcgacgctcgagcaggtgatcgagcgc
acgccagtcaagcatgtggtcatgacctcgatgggcgacctgctcggtggtctgtacggc
gcgtggatcacgattgccgtgcgccacctggccaagatggtgccgccgtacaagctgccg
ctgagcgacggacgcacggtcacgccgttcacgcaggccatctccgaagggcgtggtcgc
acgctggcggccgaccagagcacgctcgactccatcgccttccttcagtacaccggcggc
acgaccggcctgtcgaagggcgcggtgctgacgcatcggaacatcgtcgcggcgacgctg
caggccgaggcctggttcaccccggcgctgtcgcgcgccggtgacctcgcgaaggtcaac
agcatcgcggcgctgccgctgtatcacatcttcgcgctgacgctgtgcctgctggtgatc
cgccaaggctcgcacatgacgctgattccgaacccgcgcgacttcgacaagttcatcgcg
gtgctgaagaagcggccattccacatgctgccggcggtgaacacgctgtttaacgcgctc
ctgatgcatccgcagttcaagacgatcgatttctcgacgctttttgtctcgcaggccggt
ggcatggccgcgtcggaaggcacggcgcgcaagtggttcgaggcgaccggctgcccgatg
atcgaaggctggggcatgagcgagacctgcgcgatcggcaccaacaacccggtgtcgaac
accaagttcaccggcaccatcggcctgccgctgccgagcatcgagatcgcgatcaaggac
gacgagggcaactcggtgccggtcgggcagtcgggcgaactctgcatcaagggccccaat
gtgatgacgggctactacaaccagcccgccgagaccgcagccgcgttcaccgcagatggc
ttcatgcggaccggtgatatcgccgtgatgcaggaagatggctacagccgcatcgtcgac
cgcaagaaggacatgatcctggtgagcggcttcaacgtgttcccgaacgagctggagaac
gtgatttcgctgtgcccgggtgtcgtcgaatgtgcggcggtgggcgtgcctgacgagaag
cagggcgaggcgatcaaggtcttcgtggtgcgcagggacccgaatctgaccgaggacgcg
gtgctgcagtattgcaacgggcagctcactgggtacaaacggccgaagcacatcgagttt
cgcgactcgctgccgaaaaccaatgtggggaagatcctgcggcgcgagcttcgcaccagt
gcgggcgcctga
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