Vibrio parahaemolyticus UCM-V493: VPUCM_20931
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Entry
VPUCM_20931 CDS
T03116
Name
(GenBank) Exonuclease SbcD
KO
K03547
DNA repair protein SbcD/Mre11
Organism
vph
Vibrio parahaemolyticus UCM-V493
Brite
KEGG Orthology (KO) [BR:
vph00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vph03400
]
VPUCM_20931
DNA repair and recombination proteins [BR:
vph03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VPUCM_20931
Archaeal homologous recombinant proteins
VPUCM_20931
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Metallophos
SbcD_C
Metallophos_2
Metallophos_3
B12-binding
Motif
Other DBs
NCBI-ProteinID:
AHJ02052
LinkDB
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Position
2:complement(1004196..1005329)
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AA seq
377 aa
AA seq
DB search
MKFIHTSDWHLGRQFHNVSLLEDQQAVLEQLIQYIENNPVDAVIVAGDVYDRSVPPTIAI
ELLNRVVKRICGELNTPMILISGNHDGAERLGFGSEQMKRSGLHIISNFEDMLTPVVIET
KAAGHVAFYGMPYNDPEQVRYVYKEPVSTHDEAHKLIAEKITEQFQSEHRNILISHCFVD
GAIESESERPLSIGGSDRVSHEHFLNFDYVALGHLHQPQEKGEEYIRYSGSLMKYSFGEQ
NQKKGFTLVEIGKDGFIGAEHIELTAPHEMRIVEGELEQILEWGKTDPKNEDYLLVRLMD
KHAILNPMEKLRTVYPNVLHLEKPGMLIGVEQEMAQAKLARSEIDMFKDFFAEAQDSELS
NEQEQAISDIIKQLSQQ
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttatccacacctcagattggcatcttggccgacagtttcacaatgtctctttg
cttgaagatcagcaggcagttcttgagcaacttatccaatatattgaaaacaatccggtt
gatgctgtaatcgttgccggagatgtctatgatcgctccgttccaccaacgattgctatc
gagttgcttaatcgagtcgtaaagcgaatctgtggtgagctcaatactcctatgatattg
atttcaggcaatcacgatggcgcagagcgtttgggttttggttctgagcaaatgaaacgt
tcgggattgcatatcatcagcaattttgaagatatgttaacgccagttgtgattgaaacg
aaagccgctggtcatgtggctttctatggaatgccatacaatgatcctgaacaagtacgt
tatgtgtataaagagccggtgtcgacacacgatgaagctcataaactgattgccgaaaaa
attacagagcagttccaatctgagcatcgaaatattctaatcagtcattgcttcgtagat
ggtgctattgaatctgaatcagagcgaccgctctctatcggtggctctgatcgagttagc
cacgagcattttttaaacttcgattatgtcgcgttaggtcatttgcaccaacctcaagag
aaaggtgaggagtacattcgttattctggttcgttgatgaagtacagcttcggtgaacaa
aatcaaaagaaaggcttcacattagttgaaatcggcaaagatggctttattggggcggaa
catattgagttaactgcgcctcatgaaatgcgtatcgttgaaggcgaattggaacaaatt
ctagagtggggcaaaacggacccgaaaaatgaagattatttactggtgagattaatggat
aaacacgccattttaaatccgatggagaaacttcgtacggtttacccgaatgttttgcac
ctagagaagcccggaatgctaattggtgtcgagcaagaaatggcgcaagctaagctcgct
cgcagtgaaattgacatgttcaaagatttctttgctgaagcgcaggatagtgaattatcc
aatgagcaagagcaagcaatcagcgacatcattaagcaactttcacagcagtaa
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