Vibrio parahaemolyticus UCM-V493: VPUCM_2640
Help
Entry
VPUCM_2640 CDS
T03116
Name
(GenBank) RNA polymerase sigma factor RpoS
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
vph
Vibrio parahaemolyticus UCM-V493
Pathway
vph05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vph00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
VPUCM_2640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vph03021
]
VPUCM_2640
Transcription machinery [BR:
vph03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VPUCM_2640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_20
Motif
Other DBs
NCBI-ProteinID:
AHJ00599
LinkDB
All DBs
Position
1:complement(2860477..2861466)
Genome browser
AA seq
329 aa
AA seq
DB search
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGE
IGFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGN
LGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARE
LSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQ
IQVEGLRRLREILIKQGLNMENLFNVEDD
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgagtatcagcaacacagtatccaaagttgaagagtttgaatacgacaatgcgtcagag
acgaccattgataacgaactcgaaaaatcatcatctactaccgaaggcaaaacagctgtc
cgtgaagagtttgacgcgagcagtaaaagcctagacgcaactcaattgtatctaggtgaa
attggcttctcacctctacttactgctgaagaagaagttctttacgcccgcagagcattg
cgtggtgatgaagcggctcgtaagcgcatgatcgaaagtaacttgcgtttagtagtaaaa
atttctcgtcggtacagcaaccgtggcctagcgctactcgatcttattgaagaaggtaac
ctcggtttgatccgagcggttgaaaaattcgatccagaaagaggcttccgtttctcaact
tacgcaacatggtggatccgtcaaacgatcgaacgtgcgttgatgaaccaaactcgcacc
attcgcttgcctattcatgtcgtgaaagagctgaacatttatctgcgtactgcgcgtgaa
ctttctcaaaagctcgatcatgaaccaactgcagaagaaattgctgctcaattagatata
ccagtagaagatgtcagcaaaatgctgcgtcttaacgagcgtattagctccgttgatacc
ccaattggtggtgacggtgaaaaagcgcttctggatattattcctgacgcaaacaactct
gatccagaagtgtcgactcaagatgatgacatcaaatcgtctctgatccattggttggaa
gagttgaatccaaaacaaaaagaagtgcttgcacgccgttttggtttgcttggctatgag
ccgtctacgcttgaagaagtgggacgagagattggtcttactcgtgagcgtgtacgtcaa
attcaagtggagggtttacgtcgacttcgtgaaatcctaattaaacaaggcctaaatatg
gaaaacttgtttaacgtcgaagacgattaa
DBGET
integrated database retrieval system