Vibrio parahaemolyticus O1 K33 CDC_K4557: M636_21775
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Entry
M636_21775 CDS
T02760
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
vpk
Vibrio parahaemolyticus O1:K33 CDC_K4557
Brite
KEGG Orthology (KO) [BR:
vpk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vpk03032
]
M636_21775 (gyrB)
03400 DNA repair and recombination proteins [BR:
vpk03400
]
M636_21775 (gyrB)
Enzymes [BR:
vpk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
M636_21775 (gyrB)
DNA replication proteins [BR:
vpk03032
]
Prokaryotic type
DNA Topoisomerases
M636_21775 (gyrB)
DNA repair and recombination proteins [BR:
vpk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
M636_21775 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
GyrB_hook
HATPase_c
HATPase_c_3
SMC_hinge
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AGQ99571
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Position
I:complement(2909115..2911532)
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AA seq
805 aa
AA seq
DB search
MSENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIV
VTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV
SVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDTDKTGTQIRFWPSAETFSNTE
FHYDILAKRLRELSFLNSGVSIKLIDEREADKQDHFMYEGGIQAFVQHLNTNKTPIIEKI
FHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDK
EGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSE
FLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSE
LYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG
RDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPPLYKVKK
GKQEQYIKDEEAMNQYQVSLALDNASLHVNAEAPALAGEALEKLVQQYNAGIKLADRMSR
RYPRALVHELIYTSRLTAEQCHDAAVVEAWTKQLVEQLNAKEVGASQYSYEVELHAELGL
SLPKIIVRTHGVTHEHALSVDFLNSKEYGKLADLSEVLDGLLEEGAYIKRGERTLPVSSF
AEALEWLVKESMRGLSRQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADQLFTT
LMGDQVEPRRHFIEENALKVANLDV
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaattacgattcatcgagtattaaggtactgaagggtctggatgcggtacgt
aagcgtccaggtatgtacatcggggacacggacgacggcaccggccttcaccacatggtt
ttcgaggtggtggataactcaattgatgaagcgttggcaggtcactgtaaagacatcgtt
gtgacaattcatgaggacaactcggtttccgttagcgatgatggtcgtggcattccaaca
gaaatgcacccagaagaaaaagtatcagcagcagaagttatcatgaccgtactgcacgct
ggtggtaagttcgatgataactcgtacaaagtatcaggcggtcttcacggcgtgggtgtt
tcggtagtaaacgcactgtcagaaaaagtggtactaaccatccatcgtggcggtcatatc
cacacgcaaacttaccgtcatggtgagcctgaagcgcctctagcggttgtgggtgatacg
gataaaaccggtacacaaattcgtttctggccaagtgcagaaactttctctaacactgaa
ttccattacgacatcctagcaaaacgtctgcgtgagctatcgttcttgaactcaggcgtt
tctatcaagcttattgatgagcgcgaagcggacaagcaagatcacttcatgtatgaaggt
ggtattcaagcgttcgttcagcacttaaacaccaacaaaacaccaatcatcgagaaaatc
ttccacttcgacttagaacgtgaagacggtatctcggtagaagtggcaatgcagtggaac
gatggtttccaagagaacatcttctgtttcaccaacaacattccacagcgcgatggtggt
actcaccttgctggtttccgtgcggcactaacacgtacgctaaacagctttatggataaa
gaaggcttctcgaagaaagcgaaaacagcaacgtcaggcgacgatgcgcgtgaaggtttg
acagccgttgtttcggtaaaagtgcctgatccaaaattctcgagccaaaccaaagacaaa
ctggtttcttctgaagtgaaatcagcggttgaatcggcgatgggtgagaaattatctgag
ttcttggtcgaaaacccaagcgaagcgaagatggtttgttcgaaaatcatcgatgcagca
cgtgcacgtgaagccgcacgtaaagcgcgtgaaatgactcgtcgtaaaggcgcgctagac
ctagcaggcctaccaggcaaacttgcagactgtcaggaaaaagatccggcactctctgaa
ctatacattgtggagggtgactctgcgggtggttcagctaagcagggtcgtaatcgtaag
aatcaggcaatcctaccactgaaaggtaagatcctgaacgtagaaaaagcacgtttcgac
aagatgttgtcttcgcaagaagttgcaacgcttattacagcacttggctgtggtatcggt
cgtgacgagtacaacccggacaaactgcgttaccacaacatcatcatcatgaccgatgct
gacgtcgatggttcgcacatccgtacgctactgttgactttcttctaccgtcaaatgcca
gagcttatcgagcgtggttacgtgtacatcgctcagccaccactatacaaagtgaagaag
ggcaaacaagagcagtacatcaaagatgaagaagcgatgaaccaataccaagtatcattg
gcattggacaacgcatcactgcacgtaaacgcagaagctccagctctagctggcgaagcg
ctagaaaaactggttcaacaatacaatgcaggtatcaagcttgctgaccgtatgagccgt
cgttaccctcgcgccttagtgcatgagcttatctacacatctcgtctaacggctgagcag
tgtcatgatgcagcagtagtagaagcttggacaaaacaacttgttgagcaactaaacgcg
aaagaagtgggtgcaagccaatacagctacgaagtggagctgcacgcagagcttggtttg
agcctgccgaagatcatcgttcgtacacacggtgtgactcacgagcacgcgctaagtgtt
gatttcctaaactcaaaagaatatggcaagctggcggacctttctgaagtcctagacggt
cttctagaagagggcgcgtacatcaaacgtggtgaacgtactctgccagtatcaagcttt
gctgaagcacttgagtggttggttaaagaatcgatgcgtggtctaagccgtcagcgctac
aaaggtctaggtgagatgaacccagatcagctttgggaaaccacaatggacccagagacg
cgtcgcatgatgcaagtaacgattgaagatgcggtaggcgcagaccaattgttcacaacg
ctaatgggtgaccaagttgaacctcgtcgtcacttcatcgaagagaacgcactgaaggtt
gcaaacctagacgtgtaa
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