KEGG   Vigna radiata (mung bean): 106759304Help
Entry
106759304         CDS       T04126                                 

Definition
(RefSeq) DNA ligase 6 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
vra  Vigna radiata (mung bean)
Pathway
vra03030  DNA replication
vra03410  Base excision repair
vra03420  Nucleotide excision repair
vra03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vra00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    106759304
   03410 Base excision repair
    106759304
   03420 Nucleotide excision repair
    106759304
   03430 Mismatch repair
    106759304
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vra03032]
    106759304
   03400 DNA repair and recombination proteins [BR:vra03400]
    106759304
Enzymes [BR:vra01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     106759304
    6.5.1.6  DNA ligase (ATP or NAD+)
     106759304
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     106759304
DNA replication proteins [BR:vra03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    106759304
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     106759304
DNA repair and recombination proteins [BR:vra03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     106759304
   NER (nucleotide excision repair)
    Other NER factors
     106759304
   MMR (mismatch excision repair)
    Other MMR factors
     106759304
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DRMBL DNA_ligase_A_C Lactamase_B_2 RMMBL
Motif
Other DBs
NCBI-GeneID: 106759304
NCBI-ProteinID: XP_014497901
UniProt: A0A1S3TVU5
LinkDB All DBs
Position
4
AA seq 1398 aa AA seqDB search
MDSETLDSTQLFLTALKTLQPDLPPPPSTSLSPLPSSLPHSKLIPHTRFLVDAFRHAGPY
SHSYFLSHFHSDHYTGLSASWSRGVIFCSATTSSLLRNILHVPAALVVPLPLRQTLCIDG
AQVTLLDANHCPGAVQFLFAIPCADGTTALRYVHTGDFRFSSSMVSEPALTSFVGADAVF
LDTTYCNPKFVFPSQEESIDYVASVVERVERECGDSDDKVLFLVATYVIGKEKILLELAR
RFKRKIHVDARKMEVLRVLGYGESGEFTENGLESNIHVVGWNVLGETWPYFRPNFVKMKE
VMAERGGSYSRVVGFVPTGWTYEVKRSRFAVKSKDSFQIHLVPYSEHSNYDELREYVKFL
KPKRVVPTVGLDVEKSDSKHVNRIRKHFAGLVXETANKHEFXRXFXRGLGEVGFKAEKGV
SDVXEPGQGMGKEVIPLEEVEGDKSVDPGVAVGLHSFVGDTCTEDPTLLTDEEKEKIIRE
LSCSLPTWVTRDQMLDMIGISGSNVVEAVSNFYERETEFHEQVISCQTPVSTSKCCTLND
TDSFAKPSLNNANDTSKNINIFPSQDCKSTILRHKVPSPVSPAKRKRSSDSKPNKKGKVK
AKSEPRDSKQSTLTRFFKKVIPEIPGGTQSDNSEPKLEQSSEVEDLLPTDVGQIYKDEID
KFLQIINGNESLKNHAMTIIKKTKGDVNKALDIYYCNSGNLSENELSVQEESKTDRPLVK
KHASEELRIMPDISGQKVLKDNVDATQLSLPPEKYNPIQHACWRDGQPAPYLHIARTFNL
LEGERGKIKATSLLCNMFRSLLALSPADVLPAVYLCTNKIAADHENKELNIGGSLVTAAL
EEACGTNRLKIREMYNKFGDLGDVAQECRQTQRLLAPPTPLLIKDVFSALQKISVQTGNG
SISRKKGIIVHLMHSCREKEMKFLVRTLVRNLRIGAMLRTVLPALAHAVAMNSSPTFHQG
GTAENLKEKLQVLSMAVVEAYNILPNLDLIVPSLMNKGIDFSVSSLSMVPGIPIKPMLAK
ITNGIPQALKLFENKAFTCEYKYDGQRAQIHKLVDGSIRVFSRNGDETTSRFPDLIDIIK
ESSKPVASTFVMDAEVVGIDRKNGCRIMSFQELSSRGRGGKDALVTAESIKVDICIFVFD
IMFANGEQLLYFPLRLRRKYLKDLFYDEKPGYFEYAKETTIEADDACLACEATLTKINTF
LEEAIHSSCEGIMVKTLDVEAGYFPSKRSDKWLKVKRDYVEGLNDTLDLVPIGAWHGNGR
KAGWYSPFLVACFNPETEEYQSVCRVMSGFSDSFYIEMKEFFSGDKVLSKKPPYYQTGEA
PDIWFCPQVVWEIKGADFTVSPVHHAAIGLVHPSRGISIRFPRFICCVSDRNPEECSTAS
DIVEMFHSQTRKMDVTAK
NT seq 4197 nt NT seq  +upstreamnt  +downstreamnt
atggattctgaaaccctagactccacccagctgttcctcacagccctcaaaaccctccaa
cccgacctccctcctccaccctccacctccctctccccactcccctcctccctccctcac
tcaaaacttatcccccatacacgcttcctcgtcgacgccttccgccacgccggcccctac
tcccactcctacttcctctcccacttccactccgaccactacaccggcctctccgcctcc
tggtcccgcggcgtcatcttctgctccgccaccacctcctctctcctccgcaacatcctc
cacgtccccgccgccctcgtcgtcccccttcccctccgccaaaccctttgcattgatggc
gcccaagtcaccctcctcgacgccaaccactgccccggcgccgtacagttcctcttcgcc
atcccctgcgccgatggcactaccgccctaaggtacgttcacaccggcgacttccgcttt
tctagttccatggtttcggagcccgccctcacctccttcgtcggtgccgatgcggttttt
ctcgacaccacgtattgtaatcctaagttcgtttttccctcgcaagaggaatccattgat
tacgttgccagtgttgtggagagggttgagcgtgagtgtggtgatagtgatgataaagtt
ctatttcttgttgctacttatgttattgggaaggagaagattttgcttgagcttgcacgt
aggtttaagaggaagatacatgttgatgctaggaagatggaggttttgagggttcttggg
tatggggagagcggtgagtttactgagaatggtttggagagtaatattcatgttgttggg
tggaatgtgttgggggagacttggccatactttaggcctaattttgttaagatgaaggag
gttatggctgagagagggggttcctactccagggttgtgggctttgttcctaccggctgg
acctatgaggtgaagcgcagtaggtttgcagtcaagtccaaggattcatttcagattcat
cttgtgccctatagtgagcactcgaactatgatgagctcagggagtatgtgaagtttttg
aagccaaagcgggttgttccgactgtgggtttggatgttgagaagagtgacagtaaacat
gttaacagaattaggaagcactttgccgggttggtcgntgagactgctaacaagcatgag
tttntaagggntttttgncgtggccttggngaagtgggtttcaaggctgagaagggtgtt
agtgatgttntggaaccaggtcaaggtatgggcaaggaagtcattccattggaggaggta
gaaggtgataagagtgttgatccaggtgtggctgtgggtttgcattcttttgtgggagat
acttgtacagaagatcctactttgctgactgatgaagaaaaagagaaaataattcgagaa
cttagttgtagtttgcccacgtgggtcacccgagaccagatgctggatatgatcggcatc
tctgggagcaatgtcgttgaagctgtttctaatttctatgaacgtgaaactgaatttcat
gaacaagtgatttcctgtcaaactcctgtttcaacatccaagtgctgcacattaaatgac
actgattcatttgcaaaacctagccttaataatgcaaacgacactagcaaaaatattaac
atttttcctagtcaagattgtaaatcaactatcctgaggcataaagtacctagtcccgtt
tctcctgccaaaaggaagagaagtagtgacagtaagccgaacaaaaaaggcaaagtcaaa
gcaaaatccgaaccacgtgattcaaagcagtccacacttacaagattcttcaagaaagta
atacctgagattcctggtggtactcaatctgataattctgaaccaaagcttgaacaaagc
tctgaagttgaagacttgttgccaactgatgttggacaaatttacaaggatgaaattgat
aaatttttgcagataataaatgggaatgagtcattaaagaaccatgccatgactataatt
aagaagacaaaaggagatgtcaataaagcactggatatatattactgtaattctggaaat
cttagcgaaaatgaattatcagttcaagaggagagcaaaactgatagaccattagtaaag
aaacatgcatcagaggaattaagaattatgccagatatttctgggcagaaagtgttaaaa
gataacgtagatgctactcaactatctctaccaccagagaaatacaaccccatacaacat
gcatgttggagagatggacagcctgcaccatatttacatattgcacgaaccttcaacctg
cttgagggtgagagaggaaagattaaagctacttcattgttatgcaatatgttcagaagt
ttgttggctttatctccagcagatgtgcttcctgctgtgtatctatgcacaaacaaaatt
gctgcagaccatgaaaataaggaattaaatattggtggaagtttagttactgcagcactt
gaagaggcgtgtggaacaaatcgtttgaaaatacgggagatgtataacaaatttggtgat
ctcggtgatgttgctcaagaatgtcgtcaaacacagagattacttgcaccacctacacca
cttctaattaaggatgttttctctgcactccaaaagataagtgtacaaacaggcaatgga
agtatatctcgcaagaaaggcatcattgttcatctcatgcactcctgccgagagaaggag
atgaagtttcttgttcggaccttggtcaggaacttaaggattggggccatgcttagaact
gttttgcctgcgttggcccatgctgttgccatgaattctagccctacttttcaccaagga
ggaactgcagaaaatttgaaggagaagcttcaggttctttctatggcagttgttgaagca
tataacatactgccaaatctggatctaatagttccatctctcatgaacaaaggcattgat
ttttcggtttcaagtttatcaatggttccaggaatacctattaagcctatgctagcaaag
atcaccaatggtattcctcaagcactgaagctatttgaaaataaagcatttacatgtgaa
tataagtatgatggtcagcgggcccaaattcacaaattagttgatggatcgattcgcgtt
ttttctagaaatggggacgaaacaacttcaagatttcctgatctgattgacataatcaag
gaatccagcaagcctgttgcatcaactttcgtaatggatgcggaagttgttggtatagac
aggaaaaatggatgcaggattatgtctttccaggagctatcatcacgtgggagaggtgga
aaagatgcattagttacagcagagagcatcaaggtggatatatgcatctttgtctttgac
ataatgttcgcaaacggagagcagttattgtattttcctctacgtcttagacgaaagtat
ctgaaggacttattctatgatgagaaacctgggtattttgaatatgcaaaggaaacaact
atcgaagcagatgatgcttgcttagcttgcgaagccacattaactaagataaatactttc
ctggaagaggcaatccactcttcatgcgaaggaattatggtgaaaacattggatgttgag
gctggctattttccatcaaagcgttctgataaatggttaaaagtcaagcgagattatgta
gaaggattaaatgatactcttgatttagtaccgattggtgcttggcatggaaatggaagg
aaagctggatggtatagtccatttcttgtggcgtgtttcaatccggaaacagaggagtac
caaagtgtatgtcgtgtgatgtctggattctcagattcattttatatagagatgaaagaa
ttcttctctggggacaaagtattgtccaaaaagccgccatattatcaaacaggagaggca
ccagacatttggttttgtccacaagtcgtttgggaaataaaaggagcagactttacagta
tccccagttcatcatgctgcaattggcttagttcatccatctcgtggcatttcaatcaga
tttccaagatttatttgctgtgtctcagacagaaacccagaagaatgtagcacagcttcc
gatatagttgaaatgtttcattctcagactcggaagatggatgtcacggctaaatag

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