Vibrio rotiferianus: BSZ04_11645
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Entry
BSZ04_11645 CDS
T05115
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
vro
Vibrio rotiferianus
Pathway
vro03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
BSZ04_11645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vro03400
]
BSZ04_11645
Enzymes [BR:
vro01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
BSZ04_11645
DNA repair and recombination proteins [BR:
vro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BSZ04_11645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
SLFN-g3_helicase
ResIII
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ASI95647
LinkDB
All DBs
Position
2:587436..591074
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AA seq
1212 aa
AA seq
DB search
MAQMSVPTPLQTMTFPLHGARLIEASAGTGKTFTIAGLYLRLLLGHGTTDTKHRVPLTVD
QILVVTFTEAATAELRDRIRARIHDARIAFARGKSSDPVIQPLLEEIEDHKQAAEILLQA
ERQMDEAAVYTIHGFCQRMLTQNAFESGSRFNNEFVTDESHLKAQVVADYWRRNFYPLPF
ALAGEVRQLWGSPSDLLYDISNYLTGAPLSLSVPAMQGSLADLHEQNLKQIDALKGQWRD
SQEDFLALIADSDVNKRSYTKKSLPTWLEAVNAWAATETTGYDYPDKLEKFAQNVLFEKT
PKGTAPQHPVFEAIEAFLANPISLKAPLLAHAIEHCRVMLAKAKNQKQWLSFDDLLTQLS
ASIDTDETAILTERIRTLYPVAMIDEFQDTDPLQYSIFSRIYLDNPECGLFMIGDPKQAI
YGFRGADIFTYIKARNQVSAHYTLGTNWRSSADMVLAVNQIFALPDSPFIYDSDIPFHPV
DYSPSADKRVWTIGGQKQPALTYWLQETEDKPLPKGEYLTAMAEATASQIQTILTAAQQG
EACLVNGEKQKPVKAGDIAVLVRTGSEGRMVKQALADQGIASVYLSNRDSVFTSSVAQDL
QRLLQAVLTPENDRALRASLASELFALDAASLDALNNDETVWENTVNEFKEYRKLWVQRG
VLPMLRAVISKRHIAERLLEEGSSSQSENGERVLTDLMHIGELLQQASNELDSDHGLLRW
LAQSISDAEHGLGGSDDQIQRLESERNLVQIVTIHKSKGLEYDLVFLPFVFGYREASEAK
YYDAENDRTVLDITGNDASLKQADNERLAEDLRLIYVALTRAVYACFIGASPLRNGRSTK
EPTGVHHSAIGYLVQNGQEGGINDLFVGLKKQQENLDNVMICDPPKQHDEIYVAEQTELE
ALTAKELQNPIDRNWRITSYSGLVKQGSHHAEHDATIEITGFDIDSSEEQDEAELVEPER
SIFNFPRGARPGTFLHSLFEEIEFTQPATTEENTQIILGLMESEQLDEEWLPILQQLIDT
VLATPLDSKALLLNQKGPAQRLVEMEFLLPIEVLSAPALNRVIQRHDPLSAKAGDLGFQT
VQGMLKGFIDLVFEYQGKYYVLDWKSNHLGDDVFHYHGDALKSAMADHRYDLQYQIYALA
LHRFLRSRLPNYDYEQHFGGVYYLFLRGMDGQSDHGIFSAKPTFEFLQEMDHLIDGQAPD
TRSSESGQMELI
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaatgtcagttccaactccactgcaaaccatgacttttccactgcatggtgca
aggttaattgaagcatcggcaggtacgggtaaaacctttaccatcgcgggtttgtatctg
cgactcctactagggcatggcacgacagataccaaacaccgcgtgccgttgaccgtggat
caaattctggtggtgacctttaccgaagccgcaacggcggagctgcgtgatcgtattcgt
gcgcgtattcatgacgcgaggatcgcattcgctcgcgggaaaagctcagatcctgtgatt
cagcctttattggaagaaattgaggatcataagcaagccgccgagatccttttgcaagca
gagcgccaaatggatgaagccgcggtgtacaccattcacggtttctgccaacgcatgctg
acgcaaaacgcatttgaatctggtagtcgtttcaataatgagtttgtgacagacgaaagc
catcttaaagcgcaagtggttgccgattactggcgtcgtaacttctacccgctgccattc
gctttggcgggagaagtacgccaactatggggttcgccatcggatctgttgtatgacatt
agcaactacctcacgggtgcaccgctaagtctctctgtccctgcaatgcaaggtagcctt
gccgatttgcatgagcaaaacttaaagcaaattgatgctttgaaaggccagtggcgtgat
agccaagaggatttcctcgcactgattgctgattccgacgtcaacaagcgcagctacacc
aaaaagtctttaccgacgtggctagaagcggtcaacgcttgggctgcgacagaaaccacg
ggctatgactatccagataagttggagaagttcgcgcagaatgtgttatttgagaaaacg
ccgaaaggcactgcgccacagcacccagtgtttgaggcgattgaagcttttcttgccaac
ccaataagcttaaaagcgccattattagcgcatgcgattgagcattgtcgcgtgatgctg
gcaaaagcaaaaaatcagaagcaatggttgtcatttgatgacttgctgactcagctttct
gcctcgattgataccgatgaaaccgcaatactgacagagcgtatccgtacgctttatccg
gttgcgatgatcgacgaattccaagataccgacccactgcaatacagtatttttagccgc
atttatttagataacccagagtgcggtttgtttatgatcggtgatccgaagcaggcgatt
tacggtttccgtggggcggacatcttcacttacatcaaggctcgtaaccaagttagtgct
cactacacgcttggcaccaactggcgctcaagtgccgatatggtattggcagtgaaccag
atttttgctctgccagacagcccgtttatttatgactccgacattccattccaccccgtg
gattacagcccaagtgctgacaaacgcgtttggactataggtggtcaaaagcaacctgcg
ctgacttattggctgcaagaaacggaagataaacctctgccaaaaggcgaatacctcact
gctatggcagaggcgacagcaagccaaattcaaactattttgaccgcggcgcaacaaggc
gaagcgtgtttggtcaatggagaaaagcaaaagccagtcaaagcgggtgacattgcagtg
ttggtgcgaacgggtagcgaaggtcgcatggtcaaacaggcgttagcagaccaaggcatt
gctagtgtgtatttgtccaaccgcgatagcgtgtttaccagttccgtcgcacaagactta
cagcgtttgctgcaagcggtattaacgccagaaaacgacagagcattacgtgccagccta
gcatcagaattattcgctctggatgcggcaagtttagacgccctcaataacgacgaaacc
gtgtgggaaaatacggttaacgagttcaaagaataccgtaagctttgggtgcaacgtggt
gtgctacctatgctgcgtgcagtgatcagcaagcgtcatattgctgaacgtttgctagaa
gaagggtcgagttcacaaagcgaaaacggtgagcgagtacttaccgatctgatgcacatt
ggtgagctattgcagcaagcgagcaacgaattagacagcgaccacggcttgctgcgttgg
ttagcccaatccatcagcgatgcagaacatgggctaggtggcagcgatgaccaaattcag
cgtttggaatcagagcgtaacttggtgcaaatcgtcaccattcacaaatctaaaggcctg
gaatatgacttggtcttcttgccatttgtgtttggctaccgagaagcgagtgaagccaaa
tactacgacgctgagaacgatcgcaccgtacttgatatcacgggcaatgatgcgtcgtta
aaacaggcagataacgagcgccttgctgaagacttgcgcctcatctatgtagcgctaacg
cgtgccgtgtatgcctgctttattggtgcttcaccactacgcaatggtcgctcaaccaaa
gagccaactggcgtgcatcacagcgcaattggttacttggtgcaaaatggtcaagagggc
ggcattaacgatttgtttgttgggttgaagaagcaacaagagaatctcgataacgtcatg
atttgtgaccctccaaagcagcacgacgagatatatgttgcggagcaaaccgagttagaa
gcgttgactgccaaagagctgcaaaacccgattgatagaaactggcgcatcaccagttac
tcgggcttggttaagcaaggttctcatcatgctgaacatgacgcgacgattgaaatcacc
ggctttgatatcgattcttcagaagagcaagatgaggcggaattggttgagccagaacgc
tctatcttcaacttcccgcgcggcgcacgtccgggtacttttctgcacagcttatttgag
gaaattgagtttactcaaccagcgacaacggaagagaacacccaaattatcctcggttta
atggaaagtgagcagcttgatgaagagtggctaccaattctgcaacagttgattgatacc
gtgctggcaacgcctttggatagcaaagcactactgctcaatcaaaaaggtccggcgcaa
cgtttggttgagatggaattcttattaccgattgaagtactgtctgcacctgcattgaac
cgcgtgattcaacgtcatgatccgctctctgccaaagcgggcgatttgggtttccaaacc
gtgcaaggcatgttgaaaggctttattgacttggtgtttgagtaccaaggcaaatactac
gtcctcgactggaaatcgaaccacttaggtgatgatgtattccattatcatggcgatgcg
ttgaagtcggcgatggcggatcatcgctacgatctgcaataccaaatctatgctttggca
ctgcatcgtttcttgcgtagcagattgccaaattatgattatgaacagcactttggcggt
gtttattacctgttcttgcgtggtatggatgggcaaagtgatcatggtattttttctgcc
aagccaacctttgaatttttacaagagatggatcatttgattgatggtcaagcacctgac
acgcgatccagtgaatcggggcagatggagttaatttga
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integrated database retrieval system