Aliivibrio salmonicida: VSAL_I0224
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Entry
VSAL_I0224 CDS
T00782
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vsa
Aliivibrio salmonicida
Pathway
vsa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VSAL_I0224 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsa03019
]
VSAL_I0224 (recQ)
03400 DNA repair and recombination proteins [BR:
vsa03400
]
VSAL_I0224 (recQ)
Enzymes [BR:
vsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VSAL_I0224 (recQ)
Messenger RNA biogenesis [BR:
vsa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VSAL_I0224 (recQ)
DNA repair and recombination proteins [BR:
vsa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VSAL_I0224 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
CAQ77909
UniProt:
B6EPK5
LinkDB
All DBs
Position
1:268514..270349
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AA seq
611 aa
AA seq
DB search
MSSITVEQPMEQVSQSQTVLRDVFGYQEFRVGQEEVINAVLEGKDSLVIMPTGGGKSLCY
QIPALVFEGLTLVISPLISLMKDQVDQLKADGVQAECLNSTIDRDAQVSIWNRVNSGQIK
MLYVSPERVMMRDFMDRLASLNLCMIAVDEAHCISQWGHDFRPEYASLGQIKQRFPNVPI
MALTATADEATRKDILSRLSLPNPHEYLGSFDRPNIRYTVLEKHKPVSQIVRYLATQKNQ
CGVIYCGSRKKVEMLTEKLCNNHIRAASYHAGLDLDERNYVQEAFQRDDIQIVVATVAFG
MGINKSNVRFVAHFDIPKNIESYYQETGRAGRDGLPAEAVMLYDPADIVWLRKLVEEKPE
GPQKLVESHKLNAMTAFAEAQTCRRQVLLNYFGEYNPKPCGNCDVCLDPPKQFDGTEAAQ
KALSCVYRVNQSFGVGYVVEVLRGLKIARIREHGHDKLSTYGIGKDNSHEYWVSIIRQLI
HKGLLTQNITRNSTLQLTEEARPILKGQEPLELAVPRLDTAAKTAKSEKLNNRQYDKQLF
AKLRKLRKSIADRDDLPPYVVFSDATLMDMADITPTSYGEMLAVNGVGQKKLEKYADPFL
DLIEMHITGQG
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcattacagtcgagcagccaatggaacaggtatcacagagccaaactgtttta
agagatgtttttggttatcaggaatttcgtgttggacaggaagaagtcattaatgccgtt
cttgaaggtaaagacagcttagttattatgccgacgggtggcggtaaatcactgtgttat
caaattccggctttagtgtttgaaggattaactttagtcatctcgccattgatttcttta
atgaaagatcaagtggatcaattaaaggcggatggggtgcaagcggagtgtttaaattcg
actattgatcgtgacgctcaagtctctatttggaaccgagttaattcgggtcaaattaag
atgctgtatgtgtcacctgagcgtgtgatgatgcgagattttatggatcgattagcatcc
ctaaatctatgtatgatcgccgtggatgaagcgcattgtatttctcaatggggccatgat
ttccgccctgaatacgcatctcttggtcaaatcaaacagcgttttcctaatgttccgatt
atggcgctaacggcaacggctgatgaagcaacacgtaaagatatattaagtcgtctttct
ttaccaaatccccatgaatatttgggcagttttgatcgccctaatattcgctataccgtg
ttagaaaaacacaaaccagtcagtcaaattgttcgatatcttgcaacgcagaaaaatcaa
tgtggtgtgatttattgtggtagccgtaagaaagtcgaaatgctgacagaaaaactctgc
aataaccacattcgagcggcgtcttatcatgcgggtttggatcttgatgagcgaaattat
gtgcaagaagcatttcagcgagacgatattcaaatagtggttgcaacggttgcttttggc
atggggattaataaatccaacgtgcgttttgttgctcattttgatatcccaaagaacatt
gaatcgtattatcaagaaaccggtcgagcagggcgtgatggtttacctgcagaagcggtg
atgctttacgatcctgcggatattgtttggttaagaaaattagtggaagaaaagccagaa
ggtccacaaaaattagttgaaagccataagttgaatgcgatgacggcttttgctgaagcg
cagacatgtcgtcgccaagtcctattaaattattttggcgaatacaatccaaaaccttgt
ggtaactgtgatgtttgtttagatcccccaaaacaatttgatggcactgaagccgcacaa
aaagcgctctcttgtgtttatcgcgtaaaccaaagctttggtgttggttacgtggtggaa
gttctacgtggtttaaagattgctcgtattcgtgagcatggccatgacaagttatctact
tacggtattggtaaagataatagccacgagtattgggtgagcattattcgtcaattgatc
cacaaagggctattaacgcaaaatattacccgaaactcgacattacagttaaccgaagag
gcacgtccgatcttaaaaggtcaggagcccctagaattagcggttccacgtttagatacg
gcggctaaaacggcgaaatctgaaaaattgaataatcgtcaatacgataagcaattgttt
gccaaattacgtaagttacgtaaatccattgctgatcgtgatgatctcccgccttatgtc
gtttttagtgatgcaacgttaatggatatggctgacattactccgacgtcttatggtgag
atgcttgctgttaatggcgtagggcagaagaaactagaaaaatacgccgatcctttttta
gatttgatcgagatgcacattacaggacaaggataa
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