Vibrio scophthalmi: VSVS12_02459
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Entry
VSVS12_02459 CDS
T04650
Symbol
recD
Name
(GenBank) Exodeoxyribonuclease V
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
vsc
Vibrio scophthalmi
Pathway
vsc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
VSVS12_02459 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vsc03400
]
VSVS12_02459 (recD)
Enzymes [BR:
vsc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
VSVS12_02459 (recD)
DNA repair and recombination proteins [BR:
vsc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VSVS12_02459 (recD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
SH3_13
AAA_11
Helicase_RecD
Viral_helicase1
UvrD-helicase
AAA_22
SLFN-g3_helicase
nSTAND3
AAA_16
DEAD
UvrD_C
TrwB_AAD_bind
AAA_28
T2SSE
CbiA
MukB
AAA_7
ResIII
ING
NTPase_1
SRP54
RNA_helicase
AAA_24
Motif
Other DBs
NCBI-ProteinID:
ANS86219
UniProt:
A0A1B1NR31
LinkDB
All DBs
Position
1:complement(2694964..2697078)
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AA seq
704 aa
AA seq
DB search
MSGLMLTLKRLAEKGSIRQLDYQFARFIAAKSQHVELAFIAGVLSSELGKGHICLPLHDM
QGQAVDLAAKIGLYGEAALALNQQLLSIDWAALLQQSPWVSKPVAHNADPLPLVFDGERL
YLHRYWHYEVTLAEKLTSFGVAMILKPTEVQKLAKLLDHLFARSDHFLFSALSRSSGLNQ
VQRQQMVCDHLDVVDESQLDWSAIDQVLLQATRAEQLAPLEQLVPQAACVNWQKVAAAIA
LTKRFAVISGGPGTGKTTTVTKLLAALIEQAEQSGHTPTIKLVAPTGKAAARLTESIGKA
VDQLPVSPELKAAIPTESSTLHRLLGALPNSAEFRHNQANPLHLDILVVDEASMVDLPMM
YKVVDALPKHARLILLGDKDQLASVEAGAVLGDICSFYHSGYSSAQGELIAQLSGYTTLA
TANQNNKGSRVGDSLCMLQKSYRFDARSGIGQLAKAVNSGSAYQLDAVWQRGFDDIEQFP
LDMQHYNQLIQTMVAEYSHYLKRIAQRLVHPDSGEIESITQQAKAGLDAFARCRLLCAMR
EGDFGVSGLNHRVERALVARKRIQTQDELWYHGRPVMITRNDHALGLYNGDIGICMLDDS
LAEPRLKVFFELPDGSVKSVLPSRVPEHQTAYAMTVHKSQGSEFEFTVMILPKDFSPILT
RELIYTGITRAKKRLALYAQPEVVKRGIKVMTERASGLVMRLKG
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgagtggattaatgctaactctcaagcgcttagccgaaaagggctcaattcgtcagctt
gattatcaatttgcgcgctttattgcggccaaatctcagcatgttgaacttgcgtttatc
gcgggtgtgctcagcagtgagctaggcaaaggccacatctgtttgccactgcatgatatg
caagggcaagcggtcgatcttgccgctaaaataggcttatatggcgaggcggcattagca
ttaaaccaacaactcttatccattgattgggcagcgttgctgcaacagtcgccatgggtg
agcaagccagtcgcacacaatgctgatccattgcctttggtgtttgatggtgaaaggtta
tatctacaccgttattggcactatgaagtgacgttggcagagaagctaaccagctttggg
gttgccatgatcctaaagcctaccgaagtacaaaaactcgccaaattgctcgatcacttg
tttgcgcgcagtgaccatttcttgttttccgccttatcgcgttcgagtggattaaatcag
gtgcagcgccagcaaatggtgtgcgatcaccttgatgtggtcgatgaaagccaactggat
tggagcgcaattgatcaagtgttgttgcaagccacacgtgccgaacagcttgcgccacta
gagcaacttgttcctcaggcggcgtgtgttaactggcagaaagtggcggcggcgattgca
ctcactaagcgttttgcggtgatatcgggaggccctggtactggtaaaacgaccacggta
actaaactgctggcagccctgattgagcaggctgaacagagtggtcacaccccaacgatt
aagctggtggcaccgacgggtaaagcagcggcgcgcttgaccgaatcaattggtaaagcg
gtcgaccaactgccggttagcccagagctgaaagccgcgatcccaaccgaatccagcacc
ttacatcgattgttgggcgcattgccaaacagcgctgaatttcgtcacaaccaagcgaac
ccgttacatcttgatatcttagtggtggatgaagcctcgatggtcgatttaccgatgatg
tacaaggtagtggatgctttgccaaaacatgcccgtttgattttattgggcgataaagat
cagcttgcctcagtcgaagcgggggcggtactcggcgatatctgttctttctatcattct
ggttacagcagtgcacaaggtgaattgatcgcacaattatccggttatacgaccttagcg
acagccaatcaaaataacaaaggcagtcgagttggggatagcttgtgtatgctacaaaaa
agctatcgcttcgatgcgcgttcaggcattggtcagttggcaaaagcggtcaactccgga
tcggcctatcaattagatgcggtatggcagcgcggttttgacgatatcgaacagttcccg
cttgatatgcagcactacaatcagctaatccaaaccatggtggcggaatacagccactat
cttaaacgtattgcccaacgcttagttcatcctgacagtggtgaaatagaaagtattacc
caacaagccaaagcagggttagatgcttttgcgcgctgtcgcttattgtgtgcgatgcgt
gaaggggactttggcgtgagtggtttaaatcaccgtgttgagcgcgcgctggtggcgcga
aaacgcatccaaactcaagatgaactttggtatcacggtcgtccggtgatgatcactcgt
aatgatcatgcactaggcttgtataacggtgatattggcatctgtatgctggatgattca
cttgcagaaccgcgcttaaaagtgttttttgaattaccagatggcagcgtcaaatcggtg
ttgccaagccgcgtaccagagcatcaaaccgcttatgcgatgacggtacataagtcacaa
ggcagcgaatttgaatttaccgtaatgattctgccaaaagattttagccctattttaact
cgtgagttgatttataccggcattactcgcgccaaaaaacgattggcattgtatgcacag
ccagaggtggttaaacgagggattaaagtgatgacagagcgtgcaagtggtttggtgatg
agattaaaaggttaa
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