Vibrio scophthalmi: VSVS12_02460
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Entry
VSVS12_02460 CDS
T04650
Symbol
recB
Name
(GenBank) Exodeoxyribonuclease V
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
vsc
Vibrio scophthalmi
Pathway
vsc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
VSVS12_02460 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vsc03400
]
VSVS12_02460 (recB)
Enzymes [BR:
vsc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
VSVS12_02460 (recB)
DNA repair and recombination proteins [BR:
vsc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VSVS12_02460 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
SLFN-g3_helicase
AAA_11
ResIII
AAA_12
Motif
Other DBs
NCBI-ProteinID:
ANS86220
UniProt:
A0A1B1NR87
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All DBs
Position
1:complement(2697075..2700695)
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AA seq
1206 aa
AA seq
DB search
MTSCSVVTSLDTMTFPLHGARLIEASAGTGKTFTIAGLYLRLLLGHGSGESRHQTPLTVD
QILVVTFTEAATAELRDRIRARIHDARLAFARGESSDPVIKPLLAEIDDHKQAAMILLQA
ERQMDEAAVYTIHGFCQRMLTQNAFESGSRFNNEFVTDESHLKAQVVADYWRRNFYPLPL
KLAGEVRSIWSSPAALLGDVSRYLTGAPLQLSVAAMQGDLSELHQQNLAKIDQLKAQWRE
SSDDFLALISESDINKRSYTKKSLPTWLEAVGAWASSETNGYEFPEQLERFAQNVLIEKT
PKGKAPEHVVFAQVEAFISQPISLKAPLLAHAIEHCRVSLAKAKQQKQWLSFDDLLTNLS
AAMDADELGALAERIRSLYPVAMIDEFQDTDPLQYSIFSRIYLSHPECGLFMIGDPKQAI
YGFRGADIFTYIKARNQVSSHFTLGTNWRSSADMVAAVNQVFALPDSAFIYDQDIPFLPV
AASPSADKRAWSLSGKTQPALTYWLQEAEEKPLAKGEYLKAMSQATADQIQTILSASQQQ
QAHFSSDKGDKAIQAGDIAVLVRTGNEGRMVKEALAKQGIASVYLSNRDSVFSSAVAQDV
QRLLQAVLTPENDRALRASLASELFALDAGSLDALNNDETAWENAVNEYKEYRKLWLQRG
VLPMLRAVMSKRHVAERLLEEESGERNLTDLMHLGELLQQASGELDSDHGLLRWLAQAIS
DAQNGLGGSEDQIQRLESERNLVQIVTIHKSKGLEYDLVFLPFVLSYREASEAKYYDAES
DRTILDINQDKAALAQADKERLAEDLRLIYVALTRAVYGCFIGAAPLRNGRSTKEPTGVH
HSAMGYLLQNGQAGGVNDLTQAIELQTKGLSCVALQGLPESHQQTFVTDDEIEHTLHAKT
LSQAIDRAWRITSYSGLVKQGSHHHDDTSSELLRLDVDSSGEQDEQELVEPERSIFTFPR
GARPGTFLHTLFEEVEFTLPANSEENQAKIMALMESEQLELEWLPILQQLADTVLATPLD
GKDLRLNQKGPAQRLVEMEFLLPIEVLASAELNRVIQRNDPLSAKAGDLGFQTVQGMLKG
FIDLVFEHQGKYYVLDWKSNHLGDEIADYHGDALRQAMADHRYDLQYQIYALALHRFLRS
RVADYDYQRHFGGVYYLFLRGMDGEGQHGIFSAKPSFEFLTELDKLIDGEIVERRDNAAG
QMELGL
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgacatcgtgttcagttgtcacctcactagataccatgacatttccgttgcatggtgcg
cgacttatcgaagcttcggcggggacggggaaaaccttcaccattgccgggctctatttg
cgtttattgttagggcacggaagtggcgagagtcgtcatcaaacgccattaacggtcgat
caaattttggtggtgacctttactgaagcagcaaccgctgagttgcgcgatcgtattcgc
gcgcgtattcatgatgcgcgattagcctttgctcgcggtgaaagcagtgatcccgtgatc
aaacctttactcgcagagattgatgaccataaacaagcggcgatgatcttgctgcaagct
gaacgacaaatggacgaagcggcggtgtataccattcacggtttctgtcagcgcatgctc
acgcaaaatgcctttgaatcaggcagtcgttttaacaacgaatttgtcaccgatgaaagc
catcttaaagcgcaagtcgttgcggactattggcgtcgtaacttctacccattgccacta
aaactggcgggtgaagtacgttcaatttggagttcgccagccgctttgttaggtgatgtt
tctcgttacttaacgggggcgcccctgcaactctcggtggcggcgatgcaaggtgacttg
agtgaattacatcagcagaatctggctaaaattgatcagctaaaagcgcaatggcgagaa
agtagcgatgacttcctagcgttgattagtgagtctgatatcaacaaacgcagctacacc
aaaaagtccctgccaacttggttagaggccgtcggcgcttgggcaagtagtgagaccaac
ggttacgagtttcctgagcagctagagcgctttgcgcaaaatgtgttgattgagaaaact
cccaaaggcaaagcgcctgagcatgttgtctttgctcaagttgaagcttttattagccag
ccgatcagcttaaaagcgccactattggcccatgcgattgagcattgtcgtgttagctta
gcgaaagcgaaacagcaaaagcagtggttatcgtttgatgatctgctgaccaacttatct
gccgcgatggacgctgatgaactcggtgcattagctgagcgtattcgtagtttatatccg
gtggcgatgatcgatgaattccaagataccgatcctctgcaatacagcattttcagccga
atttatctctctcatcctgagtgcggtttatttatgatcggcgatcctaagcaggcgatt
tacggcttccgtggtgcggatatttttacctacatcaaagcgcgtaatcaggtttcctcg
catttcactctgggtactaactggcgttcgagtgctgatatggtcgcggcagtaaaccaa
gtgtttgccttgccagatagcgcctttatctacgatcaagacattccttttcttcccgtt
gcggctagtccaagtgctgataaacgtgcgtggtcactaagcggaaaaactcaacccgcg
ttgacctattggttacaagaagcggaagaaaagccactggctaaaggtgaatatcttaaa
gcgatgtcgcaagccacagccgatcaaattcagaccattttaagcgcttcacagcagcaa
caagcgcattttagcagtgataaaggtgataaggcgattcaagccggcgatattgctgta
ttggtgcgcaccggtaatgaaggccgcatggttaaagaggcgcttgctaaacaaggcatt
gccagcgtttatctctctaaccgtgacagcgtatttagttcggcggtagcgcaagatgta
cagcgcctgctgcaagcggtcttaaccccagaaaacgatcgtgcactgcgcgccagcttg
gcgtcagaattgttcgctctcgatgcgggcagtttagatgcgctcaacaacgatgaaacc
gcttgggaaaacgcggtgaatgaatacaaagagtaccgcaagttatggttacaacgtggc
gtgttaccgatgctgcgcgcggtcatgagtaagcgtcatgtcgctgagcgtttactagaa
gaggaaagtggcgagcgtaacctgactgatttgatgcatttaggtgagttattacagcaa
gccagtggtgaactcgacagtgatcatggtttgctgcgttggctcgcacaagcgattagc
gatgcgcaaaatggccttggtggtagcgaagaccaaattcagcgtttggaatctgagcgt
aatttggtgcagatcgtcactatccataaatcgaaaggtttggaatatgacttggtcttt
ttgccgtttgtattgagctatcgcgaagcgagtgaagccaaatattacgacgccgaaagc
gatcgcaccattttggatatcaaccaagataaagccgcgttagcgcaagcggataaagag
cgtctcgcggaagacttgcgtttgatctacgtagcgttaacccgtgccgtttacggctgt
tttattggtgctgcgccgctacgtaatggccgttcaaccaaagaaccaacgggtgtgcat
cacagtgccatgggctatttattgcaaaatggccaagcaggtggcgtgaatgatcttacc
caagcgattgagctgcaaaccaaaggattatcgtgcgttgcactgcaaggattacccgaa
tcgcatcagcaaacctttgtgactgatgatgaaattgaacataccttacatgccaaaaca
ctcagccaagcgattgatcgtgcttggcgcatcaccagttactctggtttagtaaaacaa
ggctctcaccaccatgatgacacctctagtgagctattaagactcgatgttgactcctcc
ggtgagcaagatgaacaagagttagttgaacctgaacgttcaatctttaccttccctcgc
ggtgcacgtccgggcacatttttgcacacgctgtttgaagaggtggagtttactttgcct
gcgaacagtgaagagaaccaagccaaaataatggcactgatggagagtgaacagctcgaa
ttagagtggctgccaatcttgcaacaactggctgataccgtattagcgaccccattggac
ggtaaagatctgcgcctcaatcaaaaaggacccgcgcagcgtttggtggaaatggaattc
ttactgccgattgaagtattggcttcggcagaactcaaccgggtgattcaacgtaacgat
ccattgtcagctaaagcgggcgatctcggcttccaaaccgtgcaggggatgttgaaaggt
tttatcgacttagtgtttgagcaccaaggtaaatactacgtactggactggaaatcgaac
catttaggcgatgagattgccgattatcatggtgatgctttacgccaagcgatggcggat
caccgttacgatctgcaataccaaatttacgcgttggcactgcatcgttttttacgtagt
cgagtagcggattatgattatcagcgccattttggtggtgtctattatctgtttttgcgt
ggtatggatggcgaaggtcaacacggcattttctccgcaaaaccaagttttgaattttta
actgagttagataaattgattgatggcgagatagtggaaagacgcgacaacgcggcaggg
caaatggagttaggtctatga
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integrated database retrieval system
