Vibrio atlanticus: VS_II0799
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Entry
VS_II0799 CDS
T00812
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vsp
Vibrio atlanticus
Pathway
vsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VS_II0799
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsp03019
]
VS_II0799
Enzymes [BR:
vsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VS_II0799
Messenger RNA biogenesis [BR:
vsp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VS_II0799
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Helicase_RecD
P-loop_SecA
Helicase_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
CAV26551
UniProt:
B7VSI2
LinkDB
All DBs
Position
2:complement(872230..873501)
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AA seq
423 aa
AA seq
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MSESTKSFNQLGLSEHLLATLSELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAF
GLPIIQRLIETKDNVIPNPKLVRALVLVPTRELAQQVFDNVTSYAKGTDIKVVVAYGGVS
MKVQTENLRGGADILVATPGRLIDHMFTKNIMLSHTEVLVLDEADRMLDMGFMPDIKRIL
SRMNEVRQTLFFSATFDNKIKALAHRMMQSPSEIQVTPKNSTADTVTQMVYPVDKSRKSE
LLAYLIGSKNWQQVLVFTKTKQGTDALVKELKLDGIKAASINGDKSQGARQKALDDFKSG
KVRALIATDVAARGIDIQQLEQVVNYDMPFKAEDYVHRIGRTGRAGNSGLAISLMSQDEA
YLLGDIERLLDTRLPQEWLEGFEPSLEKDLAPDRGGRSKSRSSEKRKMKAKLKIHQNRGK
ARR
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaatctacaaaatcttttaaccaactaggattatctgagcatcttcttgctacg
ctgtcagagcttaactttacggctcctaccagtgttcaagagcaagcgattccattggta
ttagaaggcaaagatgtattggctggtgctcaaacgggtacaggtaaaacggccgcattt
ggtttgccaattatccaaagattaatcgagacaaaagataacgttattccaaacccgaag
ctagttcgtgcgcttgtgttggtaccaacacgcgaactagcgcaacaggttttcgataac
gtaaccagctacgcaaagggcaccgacatcaaagtcgtggtggcttacggcggcgttagt
atgaaggttcaaactgaaaacctacgcgggggagctgatattcttgtcgcgactccgggc
cgtcttatcgaccatatgttcactaagaacatcatgttgagccacactgaagtgttggta
ctggatgaagcagaccgcatgctagacatgggtttcatgcctgatatcaaacgcattctt
tctcgtatgaatgaggtgcgacagactctgttcttctctgcgacgtttgataacaaaatt
aaagctctggcacatcgaatgatgcagtcgccaagcgaaattcaagtgacgccaaaaaac
agtaccgctgacaccgttacccagatggtttatcccgttgataaatcgcgcaagagtgaa
ttattggcttatttgattggctcaaagaactggcaacaagtgttggtgtttactaagact
aagcagggcaccgatgctctcgttaaagagcttaagctagatggtattaaagcggcatca
atcaatggtgataagagccaaggtgcgcgccaaaaagcattagacgatttcaagtcaggc
aaagtacgcgcgttaattgcaaccgacgtggcagctcgaggtattgatatccagcagcta
gaacaagttgtgaattacgatatgccatttaaagcggaagactacgttcaccgtattggt
cgtactggccgtgctggcaacagtggtttagcgatctctttgatgagccaggatgaagct
tacctactgggtgacattgaacgattgctggatacgcgcttgcctcaagagtggctggag
ggttttgaaccaagcctagaaaaagatctagcccccgatcgaggtggtcgcagtaaaagt
cgttcatcagaaaaacgtaagatgaaagcgaaacttaagattcaccaaaaccgcggtaaa
gcacgtcgctaa
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