Vibrio spartinae: Vspart_03895
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Entry
Vspart_03895 CDS
T07037
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
vsr
Vibrio spartinae
Pathway
vsr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Vspart_03895 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsr03019
]
Vspart_03895 (deaD)
03009 Ribosome biogenesis [BR:
vsr03009
]
Vspart_03895 (deaD)
Messenger RNA biogenesis [BR:
vsr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Vspart_03895 (deaD)
Ribosome biogenesis [BR:
vsr03009
]
Prokaryotic type
rRNA helicases
Vspart_03895 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
WYL
HTH_60
Motif
Other DBs
NCBI-ProteinID:
QMV16501
UniProt:
A0A7D7X9J8
LinkDB
All DBs
Position
2:504134..505972
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AA seq
612 aa
AA seq
DB search
MQENVIQFKELALKNEILSALDNMGFVSPTPIQAAAIPFLLEGRDALGKAQTGTGKTAAF
SLPLLNKLIMDQRKPQAIVMAPTRELAIQVAAEIKTLGQQIAGLKVLEIYGGASIVDQMR
ALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQSPET
AQRVLFSATMPPMVKNIVDRYLRNPARVDVAGSNQTVAKVEQQYWVVKGVEKDEAMVRIL
ETEETDASIVFVRTRQDTERLADWLSSRGFKATALHGDIPQSLRERTVEHIKKGVTDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTRSSMEEIQLPHRDKVAQARLVQLSQELETEKEHKALEKFSELIESLRDSLDIDTTT
LAAMLLKRQQGKRPLFYVGDDPMIAEIEREKSRRRDRRDGGDDSRRSYGQGNQDWDTYQL
QVGREQGVQVKDIVGALANELGLGKGSIGAIKLAQGHTFVQLPKSMSSDVTRKLRKLRIR
QKDVGAVVCDFDDFRESRGRREGSRPNRSGEGRGSRDNSRREGERRFDRNRGGDHRGAHR
GERGHTRRHTEA
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaaaatgtaattcaattcaaagaattagcgctcaaaaacgaaatcctctctgct
ctagacaatatgggcttcgtttctcctacacctattcaggctgctgcaattccatttttg
ttggaaggccgtgatgctttaggtaaagcacaaaccggtaccggaaaaaccgcagcattc
tctctacctctgctcaacaaactgattatggatcagcgtaagcctcaggccattgtcatg
gcaccgacgcgtgagctggcaattcaggttgctgcagaaatcaaaactttaggccaacaa
attgcaggcctgaaagtattagaaatttatggtggtgcatcgattgttgatcagatgcgt
gcccttaaatcgggagctcatatcgttgtgggtacaccgggacgggttaaagatttaatt
acccgtgatcgtctccatttggatgagtgtcacacctttattctcgatgaagctgatgaa
atgctgaaaatgggttttgtcgatgatgtgacctggattatggaacaatctcctgaaact
gctcagcgtgttttgttctcagctacaatgccgccaatggtcaaaaacattgtagaccgt
tatctgcgtaatccggcccgcgtggatgtggcaggttcaaaccagaccgttgctaaagta
gaacagcaatactgggttgtgaaaggcgttgaaaaagatgaagccatggttcgtatactt
gagacggaagaaacggatgcatccattgttttcgtgcgtacccgtcaagacaccgagcgt
ctggctgactggctttcttctcgcggatttaaagcgacagcgctgcatggtgatattcct
cagtctttacgtgaaagaacggttgagcacatcaaaaaaggtgtcactgacattctggtt
gcaacggatgttgttgctcgtggactggatgtgcctcgaattacgcacgtattcaactac
gatatcccatttgacgtcgaatcttatattcaccgtattggtcgtactggccgtgccgga
cggaaaggaaaagcgatcctgttggttcgtacaaaccaaatccgcatgttgcgtacgatc
gaacgagtgacgcgttcttctatggaagaaattcagttaccgcatcgtgacaaagttgct
caggcacgcttggttcaactgagccaagaacttgaaactgaaaaagaacataaagcattg
gaaaaattttccgagctgattgaaagcctcagagattctttagacatcgataccacaaca
ctggcagcgatgttactgaagcgtcaacagggtaaacgtccattattctacgtgggtgac
gacccgatgattgctgagatcgagcgtgaaaaatcacgtcgtcgtgatcgtcgtgacggt
ggtgatgatagccgccggagttatggtcagggaaatcaggattgggatacttaccaacta
caagtcggtcgtgaacaaggtgtccaggttaaagatatcgtcggtgcactggcaaacgaa
ctggggcttggtaaaggctcaatcggggccattaaactggcacaaggccatacattcgtt
caattgccgaaaagcatgtcttctgacgtgacccgtaagctgcgtaaacttcggattcgt
cagaaagatgtcggagctgtcgtgtgtgactttgatgacttccgtgaatctcgcggccgt
cgtgaaggtagtcgtccaaaccgtagtggtgaaggtcgtggctcccgcgataatagtcgt
cgtgaaggcgaacgccgttttgatcgtaatcgtggtggggatcatcgaggtgctcatcgt
ggtgaacgcggtcatacccgacgtcacactgaagcataa
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