Vibrio tubiashii: IX91_01160
Help
Entry
IX91_01160 CDS
T03445
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vtu
Vibrio tubiashii
Pathway
vtu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vtu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IX91_01160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vtu03019
]
IX91_01160
03016 Transfer RNA biogenesis [BR:
vtu03016
]
IX91_01160
Enzymes [BR:
vtu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
IX91_01160
Messenger RNA biogenesis [BR:
vtu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IX91_01160
Transfer RNA biogenesis [BR:
vtu03016
]
Prokaryotic type
tRNA degradation factors
IX91_01160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
AIW12841
UniProt:
F9T852
LinkDB
All DBs
Position
1:246977..249439
Genome browser
AA seq
820 aa
AA seq
DB search
MSDNIHNDPFAARESENYENPIPSREFILEFLSQAGVPMNRNDLFDALKLKGEDHYEGLR
RRLRAMERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSVGKDNDIVLPHH
QMKNIIHGDYVLVQPTENSKRGRKEGRLVRVLEERVTQIVGRFFMEYGYSYVVPDDSRIS
QDILIPNDLRAGARMGNVVVIEITDRGSRSRGMMGKVVEVLGENMAPGMETQIAIRTHQI
PHEWPEAVDKQIEGLGEEVPEEAKVGRVDLRELPLVTIDGEDARDFDDAVFCEKKKSGGW
RLWVAIADVSYYVRPDSALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCM
VCEMTISETGKLSGYKHYEAVMNSHARLTYNKVHHILEGDEELRQRYEPLVPHLEELHKM
YKVLKHARDNRGAIEFETVETKFIFNAERKIDSIEPVIRNDAHKIIEECMILANIASASL
VEKAKEPALYRIHESPGELRLQGFRDFLGELGLHLNGGLEPSPTDYADLVKQIGERQDKE
LIQTMLLRSMKQAVYNADNCGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKENGTL
KDRWTPTGGCHYSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEELEGVIA
NVTGFGFFVRLSDLHIDGLVHISALANDYYQFDPIGQRLIGESFGAIYRLGDAVKVKVLS
VNLDDRQIDFELVETSRKLRGEGKTAKKRAAEAKRKAKEKKRAATKGGKAGRKASPDVEP
TKRPEPSESGTGKKPKVTKARKKKPGAKPKKAKRTKKAAQ
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacaatatccataatgacccatttgcagctcgtgaatcggaaaattatgaaaac
ccgatcccaagccgtgagtttattcttgagttcctcagccaagctggcgttccgatgaac
cgcaatgatctctttgacgctttaaagctgaaaggagaagatcattacgaaggcttacgt
cgtcgactgcgcgccatggagcgtgacgggcaactggtcttcactcgccgccaatgctac
gccttaccagagaaactggaaatggtgaaaggctatgtgattggtcataaagatggtcat
ggttgggtgcgtcccgaaggaagcgtcggcaaagataacgatatcgtacttcctcatcac
caaatgaaaaacatcatccatggtgactatgtattagttcaaccaactgagaactcaaag
cgaggccgaaaggaagggcgcttagttcgtgtacttgaagagcgcgtcacgcaaatcgtt
ggtcgcttctttatggaatatggttactcatatgtggtgccagatgactcgcgcattagc
caagacatcttgatcccgaatgacctacgtgcaggggcgcgtatggggaatgtcgtggtg
attgaaattacggatcgtggctctcgttctcgcggtatgatgggtaaagtggttgaagtc
ttaggtgaaaacatggcaccagggatggagacacaaattgcgatccgtactcaccaaatt
cctcacgagtggcctgaagcagtcgataagcaaatcgaaggacttggtgaagaagtaccg
gaagaggcaaaagttggtagggtagacctacgcgaactgccactcgtgactatcgatggc
gaagatgctcgtgactttgacgacgctgttttctgtgagaaaaagaaaagcggtggttgg
agactttgggtcgctattgctgatgtcagctattacgttcgcccagacagtgcactggat
aaagaagcgattaaccgtggtaattcggtatacttcccatcgcaagtggttccaatgctc
ccggaagtattatctaacggcttatgttctcttaacccacaagtcgatcgtctgtgtatg
gtgtgtgagatgaccatctccgagacgggtaagttatctggctataagcactacgaagcg
gtgatgaactctcatgctcgcctgacctataacaaggtacaccatatccttgaaggggat
gaagagctgcgccaaagatacgaaccactcgttcctcacctagaagagctgcataagatg
tataaagtgcttaagcatgctcgtgacaatcgtggtgcgattgaatttgaaacggtggaa
accaagttcatcttcaacgcggagcgtaagattgacagtattgaacctgtgattcgcaac
gatgcgcataagattattgaagagtgtatgatcttagccaatatcgcttctgcttctttg
gtcgaaaaagcaaaagaaccggcactctaccgaattcacgaatctccgggtgaactccgt
ctgcaaggtttccgtgacttcttgggtgagttaggtctgcacttaaatggtggtttagag
ccatcgccaaccgattacgctgacttagttaagcaaattggcgagcgtcaagacaaagag
ctgattcaaaccatgctgttgcgttcgatgaagcaagcggtctacaacgcagataactgc
ggccactttggcttggcactaaaacgctacgcgcactttacctcgcctattcgtcgctac
ccagacttgctattgcatcgcgcgattaaatatctaattgccaaagaaaatggcacattg
aaagatcgctggacaccaaccggtggttgccactattcatttgatgacatggacttctac
ggtgaacaatgttcgatgactgagcgtcgcgccgatgatgcgactcgcgaagtttctgat
tggctcaaatgtgaatacatgcaagaccatgttggtgaggaactcgaaggcgttatcgcc
aatgttactggttttggtttcttcgttcgtcttagcgatctgcatattgacggtttggtg
catatttcagcgctggcgaatgactactatcaatttgaccctattggtcagagacttatc
ggtgaaagctttggtgctatctatcgattaggtgatgcagtgaaagtcaaagtgctttcc
gttaatctcgatgatcgtcaaattgactttgaattagtcgaaacaagtcgtaagctacgc
ggcgaagggaagacggctaagaagcgcgcggcagaggcgaaaagaaaagccaaagagaaa
aaacgcgccgcaaccaaaggtggcaaagcaggccgtaaagccagccctgacgttgaacca
accaaacgtccggagccgtcagagtcaggaacaggcaagaagccgaaagtgactaaggcg
cgtaaaaaaaagccgggcgcaaaacctaagaaagccaagcgtactaagaaagctgcgcag
taa
DBGET
integrated database retrieval system
