KEGG   Vitis vinifera (wine grape): 100243413
Entry
100243413         CDS       T01084                                 
Name
(RefSeq) DNA repair protein RAD50 isoform X1
  KO
K10866  DNA repair protein RAD50 [EC:3.6.-.-]
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03440  Homologous recombination
vvi03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    100243413
   03450 Non-homologous end-joining
    100243413
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vvi03032]
    100243413
   03400 DNA repair and recombination proteins [BR:vvi03400]
    100243413
DNA replication proteins [BR:vvi03032]
 Eukaryotic type
  DNA Replication Termination Factors
   MRN complex
    100243413
DNA repair and recombination proteins [BR:vvi03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    MRN(MRX) complex
     100243413
    BRCA1-C complex
     100243413
   NHEJ (non-homologous end-joining)
    MRX complex
     100243413
SSDB
Motif
Pfam: AAA_23 SMC_N AAA_21 Rad50_zn_hook SbcC_Walker_B AAA_29 AAA_16 ABC_tran AAA_22
Other DBs
NCBI-GeneID: 100243413
NCBI-ProteinID: XP_002266665
LinkDB
Position
5:join(16406717..16406839,16406919..16407005,16407301..16407468,16413333..16413508,16414034..16414148,16431905..16432133,16432355..16432533,16432633..16432803,16443522..16443626,16443718..16443825,16443933..16444144,16444253..16444345,16452247..16452374,16467850..16467964,16468059..16468188,16468305..16468514,16472151..16472359,16472550..16472751,16474291..16474460,16474537..16474861,16483127..16483252,16483334..16483386,16484424..16484574,16484656..16484718,16484803..16484936,16485023..16485151,16485224..16485263)
AA seq 1316 aa
MSTVDKMLIKGIRSFDPENKHVIAFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNAR
SGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKASKMEYKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAVLENVIFVHQDDANWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQILKDAAYKLRESIEQDQEKTESLKI
QMQELENNIQNVDAKIQHTEATLKDLRKLQDQISTKTAERSTLFKEQQKQYAALAEENED
TDEELNEWKTKFEERIALLESKISKLEREMDDTETKGSFLKQTINDYIWEISKLQTEAEV
HSSLKNERDSTIQKLFARNNLGSLPSVPFSNEIALNFTNRIKTRLMDLEKDLQDKKKSIE
MELKVAWDRYMDANDHWKDIEAQKQAKVEIKSGILKRIEEKENERDSFELQISNVSLSHI
DEREKNLRIEVERKTNQLAEREFESNIRQKQSELYSIEQKIKALNREKDIMAVDSEDRVK
LSLKKGELENHKKKHQKIMDEYKDRIRGVLKGRLPPDKDLKKEITQALRALGIEFDDMNS
KSREAEKEVNMLQMKIEEVNNNLSKLNKDMDSRKRFIESKLQSLDQQSFSIESYMKAFDL
AKEKRDVQKSKYNIADGMKQMFDPFERVARAHHVCPCCERPFSAEEEDEFVKKQRVKAAS
SAEHMKVLAVESSSAESLFLQLDKLRMVYEEYVKIGKETIPLAEKNLNELTEELDQKSQA
LDDVLGVLAQVKTDKDSVEALMQPVETADRLFQEIQTWQKQVDDLEYKLDFRGQGVRSME
EIQLELNTLQNTKDNLHNDLEKLRDEQRYMENDLSNIQIRWHTLREEKVKAANTLRDVKK
AEEELDRLVEEKSQVDLHEKHLAEALGPLSKEKEKLLSDYNDLKAKLDFEYEQQAEQKRN
YQQEVEALLKVTSKIKEYYDSKKGERLKELKEKQSLSESQLQSCDARKQEILTELNKSKD
LMRNQDQLKRNIEDNLNYRKTKAEVDKLTIEIELLEDRILKIGGVSAVEVDLGKLSQERE
RLLSELNRCHGTTSVYQSNISKHKIDLKQTQYKDIDKRYCDQLIQLKTTEMANKDLDRYY
NALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDCIRIHSDSEGAGTRSYSYKVLMQT
GDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALL
RIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEAQEIFD
NT seq 3951 nt   +upstreamnt  +downstreamnt
atgagtacagtagataagatgctaataaagggcatccggagttttgatccggaaaacaaa
cacgtcatcgccttcttcaagcccttaactctcattgttggtcctaatggcgctggcaaa
accaccattatcgagtgtttgaagctttcatgtaccggagagttgcctcctaacgcaagg
tctggtcacagtttcatccatgatcccaaggttgcaggggagacggaaacgaagggacag
ataaagcttagattcaagacagctgctggtaaggatgtggtgtgcataaggtcgttccag
ctgacgcaaaaagcttctaagatggagtacaaggcaattgagagtgtccttcagacaatt
aatcctcacaccggagagaaagtttgccttagctatagatgtgctgacatggatcgagaa
atacctgctttaatgggggtttcaaaggctgtccttgaaaatgttatatttgtgcaccaa
gatgatgccaactggccactgcaagatccttcaacattaaaaaagaagtttgatgatatc
ttctctgctacccggtacactaaggcgttggaggtcattaaaaagcttcacaaagatcag
gctcaagaaataaagacatataagctgaagttagagaatcttcaaatcctgaaagatgca
gcatataagcttcgagaaagcattgaacaagatcaagagaaaacagagtcattaaaaatt
caaatgcaggaattggaaaataacatccaaaatgtggatgccaagatacagcatactgaa
gcaactttaaaagacttgcggaagctacaagaccagatatcaactaaaactgctgaaaga
agcaccttgtttaaggagcagcagaaacaatatgcagctcttgctgaggagaatgaagac
actgatgaagaattaaacgaatggaaaaccaagtttgaagagagaattgcactcttagaa
tctaaaatcagcaagttagagagggaaatggatgacacagagacaaaaggttctttcctt
aagcagacaatcaatgactatatctgggagataagcaaacttcaaactgaagctgaagtt
cattcctccttgaagaatgaaagagattcaactattcaaaaactttttgcaaggaataat
ttagggtctcttcccagtgtccccttcagcaatgaaattgctttgaacttcacaaaccga
ataaaaacaaggttaatggatcttgagaaggacctgcaagataaaaagaaatcaattgaa
atggaacttaaggtggcatgggatcgttacatggatgcaaatgaccattggaaagatata
gaggctcaaaaacaggctaaagtagagatcaagagtggtattttgaaacgcattgaagag
aaggaaaatgagcgtgattcatttgaactccaaatttctaatgttagtctgtctcacatt
gatgaaagagaaaaaaatttgagaattgaggttgagagaaagacaaaccagcttgctgaa
cgagaatttgagtcaaacatccgtcaaaagcagagtgagttgtatagcatagagcaaaaa
attaaagctcttaatagagagaaagacatcatggctgtggattcggaggacagagtgaaa
ttgtctctgaagaagggagagttggaaaaccacaaaaagaaacatcaaaagataatggac
gaatacaaggacagaatcaggggagtgctgaaagggaggcttcctcctgataaggatttg
aagaaggaaattactcaagccctaagggctcttggaattgagtttgatgacatgaactca
aagtcccgtgaagctgagaaggaggtgaatatgctgcagatgaaaatagaagaagttaac
aataacctttccaaacttaacaaggatatggactcaaggaagagatttattgaatctaaa
cttcagtcattggatcagcagtcttttagtatcgaatcttatatgaaggcctttgatttg
gcgaaggagaaaagagatgtccagaaaagcaaatataacattgcagatggcatgaagcaa
atgtttgatccttttgaaagagttgcccgtgctcatcatgtttgcccttgctgtgagcgt
cctttctctgctgaagaggaagatgagtttgttaaaaagcaaagagtgaaggctgcaagt
tcggcagagcatatgaaagtgttggctgttgagtcatccagtgccgagtcactattcctg
cagttggataaacttcgtatggtatatgaagaatatgtcaaaattggaaaagaaacaatc
cctcttgcagagaaaaatttaaatgagctcactgaagaattggatcagaaatctcaggcc
cttgatgatgtgttgggtgttttagctcaagtgaagactgataaagactcagttgaggcc
ttgatgcaacctgtggaaactgctgacaggctcttccaggaaattcaaacttggcaaaag
caagttgatgacttagagtataaacttgattttcgagggcaaggtgtcagatctatggaa
gaaattcagttggagctgaatactttgcagaacacaaaggataatttgcataatgatctg
gagaagttaagggatgagcaaaggtacatggaaaatgatctatcaaatattcaaatacgg
tggcacactctaagggaagagaaggtgaaagcagctaatacattgcgggatgttaaaaag
gctgaagaagagcttgatcgtttggttgaggaaaaaagtcaagtagaccttcatgagaag
catttggcagaggctcttggacctttatcaaaggagaaagagaaattactaagtgactac
aatgatttgaaagcaaagcttgattttgaatatgagcaacaggctgaacaaaagagaaat
tatcaacaggaagttgaggcactccttaaagttacttctaagattaaagagtattatgat
tcaaagaaaggggagaggttgaaggaacttaaagaaaagcaatctttatcagagtctcaa
cttcaaagttgtgatgccaggaagcaggaaattttaactgaactaaataaaagcaaagat
ttgatgcggaatcaagaccaattaaagcgaaatattgaggacaatttgaattataggaag
acaaaggctgaagtagataaacttaccattgagattgaattgctggaagacaggatattg
aagattggtggggtttctgctgttgaagttgatcttggaaagctatcgcaagaaagagag
agacttctttcagagttaaacaggtgtcatggaacaacatctgtttaccagagcaatatt
tcaaaacataagattgatcttaaacaaacacagtacaaggacattgacaaacggtactgt
gatcagctaattcagctaaagacaactgagatggcaaacaaggaccttgacagatactac
aatgcacttgacaaagcactcatgcgtttccatacaatgaaaatggaggaaataaataaa
attataagagagctgtggcagcaaacatacagggggcaagatatagactgcattagaatt
cattcagattctgaaggtgctgggactcgatcttacagctacaaggttcttatgcagact
ggtgatgcagagttagaaatgagaggaaggtgtagtgctggtcagaaggtccttgcttca
ctaatcataaggttggcattggccgagactttttgccttaattgtggaatactagcattg
gatgaaccaaccacaaacttagatggcccaaatgctgagagtcttgcagccgctttattg
agaatcatggaggatagaaaagggcaggagaattttcaactaatagttattactcatgat
gagagatttgctcagctaattggtcaacgtcagcatgcagaaaaatactatagagttgcg
aaggatgatcatcagcatagtataattgaagcccaggagatatttgattga

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