Vitis vinifera (wine grape): 100250596
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Entry
100250596 CDS
T01084
Name
(RefSeq) ATP-dependent DNA helicase 2 subunit KU80 isoform X2
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
100250596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vvi03400
]
100250596
DNA repair and recombination proteins [BR:
vvi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
100250596
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Ku_N
Ku_C
VWA_2
Motif
Other DBs
NCBI-GeneID:
100250596
NCBI-ProteinID:
XP_002273349
LinkDB
All DBs
Position
15:join(18080273..18080287,18081825..18081917,18082321..18082372,18083963..18084094,18084717..18085120,18087095..18087381,18087504..18087699,18087788..18087994,18089334..18089501,18089592..18089918,18090176..18090306,18090400..18090460)
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AA seq
690 aa
AA seq
DB search
MARNKEALLLLLDVSPSMHTFLPEVEKLCSMLLQKKLIYSKNDEVGIVLFGTEDTNNELT
KEVGGYEHVVVLRHIKVVDGDLVEALQQLPRGTVAGDFLDAIVVGMDMLIKKFGSTNKGK
KRLCLITSALCPIKDPYEGTKEDQIGTIAEQMSAHGMKLECIVARGRLSGNVDMRIMDEN
DLLLKLFSTKTTAKTLYVETPTSLLGALRTRSIAPVTIFRGDLELSPKMRIKVWVYKKTA
EERFPTLKQYSDQAPPTDKFATHEVKVDFEYKSVEESSKVVPPEQRIKGYRYGPQVIPIS
SAEWEAVKFKPEKGVKLLGFTDASNVMRHYYMHDVNIFIAEPSNTKAMLAVSALARAMKE
MNKVAILRCVWRQGQGSVVIGILTPNVSDKDDIPDSFYFNVLPYAEDVREFQFPSFSNLP
ASWQPNEEQQEAADNLVKMLDLAPSGSKETLLPDLTPNPVLERFYRHLELKSKHPDAAVP
PLDESLKKITEPDPKLLSQNKPIIDAFRRRFELKENPKLKKSTRRLLRERPSGLNEEASM
GDGSDGQAIKSIENTSTVGVEKIGDSTPIQDFEAMMSCRDSPEWVGKAINEMKNKIFDLV
EDSYEGDNYLKALEYLVALRKGCVLEQEPKQFNDFLHHLYKYCEKHNLNSFCESLASKEI
MLINKTEAADSEVTEDEARSLMVKKEPKLE
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggctcgaaataaggaggcattgcttttattgcttgatgtcagtccatcaatgcacact
tttctgccagaggttgaaaagctctgctccatgctattacagaagaagctgatttacagc
aaaaatgatgaagtgggaattgttttatttggaactgaagataccaataatgagctgaca
aaggaagtgggaggatatgagcatgtggtggtcttacgacatatcaaagttgttgatggt
gatcttgttgaagctttacagcagcttccacgaggaactgttgctggtgattttcttgat
gccattgttgttgggatggatatgttgataaagaaatttggatctacaaacaagggaaaa
aaacgtctttgtcttattacaagcgcactatgtcctatcaaagatccttatgaaggaaca
aaagaagatcaaattggtaccattgctgaacaaatgtctgcacatggcatgaaactagaa
tgtatagttgcaagggggaggctgagtggcaatgtggatatgagaataatggatgagaat
gatcttctgttgaaactattttcaacaaaaacaactgcaaagacactgtatgttgagact
ccaacttcattattaggtgcccttagaactcgaagcatagcacctgttacaatattcagg
ggtgatcttgaactaagccccaaaatgaggatcaaggtatgggtttacaagaaaacggct
gaggagaggttccccactctgaagcaatattctgatcaggctcctccaactgataaattt
gccacgcatgaggtgaaggtagattttgagtacaaaagcgttgaagaatctagcaaagtt
gtacccccagagcaaaggattaaaggttatcgttatgggcctcaagttattcctatttca
tccgcagaatgggaagctgtcaagttcaaaccagaaaagggtgtgaagcttttaggattt
actgatgcttcaaatgtaatgcgccactattatatgcacgatgtcaacatcttcattgct
gagccgagcaatacaaaggccatgctcgcagtttctgccttagcaagagcaatgaaggaa
atgaataaggtagcaattttgcgctgtgtatggagacaaggacagggaagtgttgtcata
gggatcttgacacccaatgtgtctgacaaagatgatatcccagattcattttacttcaat
gtacttccttatgctgaggatgttcgggaatttcagtttccatctttcagtaatctccct
gcatcgtggcagccgaatgaagaacagcaagaggcagcagataacttggtcaagatgctt
gaccttgcaccatctggcagcaaggagactctactgcctgatttgacaccaaatcctgtt
ctggagcgtttttatcgtcatcttgagttgaaatcaaagcacccagatgcagctgttcct
cctcttgacgaaagtctcaagaagataactgaacctgatccaaaacttctttctcaaaac
aagcccataattgatgcattcagaaggcgctttgaactcaaagagaatccaaagcttaag
aaatcaactagacgattattgagagaaagaccatctggactgaatgaggaagctagtatg
ggggatggtagtgatggccaagccatcaaatctattgaaaatacatctactgttggggtt
gagaagattggagattcaactcctattcaagattttgaagccatgatgtcatgcagagat
agcccggaatgggttgggaaagcaattaacgaaatgaaaaataaaatttttgacctggtg
gaagactcctatgaaggggataattatcttaaagcactggaatatctagttgcccttcgc
aagggttgcgtccttgagcaagaaccaaaacagttcaatgatttccttcaccatctttac
aaatattgtgagaaacataaccttaatagtttctgcgaatctcttgcatccaaggagatc
atgctgatcaacaagacagaagcagcagacagtgaagttacagaagatgaggctagaagc
ttgatggtgaaaaaggagccaaaactagagtaa
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