KEGG   Vitis vinifera (wine grape): 100256907Help
Entry
100256907         CDS       T01084                                 

Definition
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03030  DNA replication
vvi03410  Base excision repair
vvi03420  Nucleotide excision repair
vvi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    100256907
   03410 Base excision repair
    100256907
   03420 Nucleotide excision repair
    100256907
   03430 Mismatch repair
    100256907
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vvi03032]
    100256907
   03400 DNA repair and recombination proteins [BR:vvi03400]
    100256907
Enzymes [BR:vvi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     100256907
    6.5.1.6  DNA ligase (ATP or NAD+)
     100256907
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     100256907
DNA replication proteins [BR:vvi03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    100256907
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     100256907
DNA repair and recombination proteins [BR:vvi03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     100256907
   NER (nucleotide excision repair)
    Other NER factors
     100256907
   MMR (mismatch exicision repair)
    Other MMR factors
     100256907
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-GeneID: 100256907
NCBI-ProteinID: XP_002272683
LinkDB All DBs
Position
6
AA seq 782 aa AA seqDB search
MLGLRSCHCLGHNPLSRSLNLRFSPPLSASFKSFSLNSFFSSSPNPKTKPKPQSKRKPTM
SSLPSAFDALMSKARAAAKKKPQSQSESQSQSSSPKKRKTQTQTPDLAPPKKSTNSQTPD
SKIEPLDALPAKKPKKVDVEECIGQLRKKAADFNPKTAAYWEDKPVPFLFLVRAFDMISK
ETGRIVITDIVCNMLRTVMHATPDDLVAVVYLSANRIAPAHEGLELGIGDASIIKALAEA
CGRKEEQIKSQYKALGDLGLVAKACRSSQSLMRKPDPLTVAKVFNTFGLIAKESGKDSQE
KKKNHIKTLLVAATDCEPQYLIRLLQTKLRIGLAEQTLLTALGQAAVYNDKELTQPPPHI
QSPLEEAANIVKQSYSVLPVYDKIVPALLSGGVWNLPKTCSFMPGVPVGPMLAKPTKGVS
EIIDKFQDMEFTCEYKYDGERAQIHYKEDGSVEIYSRNAERNTGKYPDVVVAVSRLKKSS
VSSFVLDCELVAYDRQKGKILPFQVLSTRARKNVVMSEIKVDVCIFAFDILYRNGQPLLQ
EQLKIRREHLYESFEEEPGFFQFATAITSNDLEEIQKFLEAAVDTSCEGLIIKTLNGDAT
YEPSKRSHNWLKLKKDYMENIGDSLDLVPIAAFHGRGKRAGVYGAFLLACYDSNKEEYQS
ICKIGTGFSEAVLEERSASLRSKVISRPKPYYRYADSIDPDVWFEPTEVWEVKAADLTIS
PVHRAAVGIVDPNKGISLRFPRLVRIRDDKNPEQASSSDLVAEMYNGQKLNHQSNQDENE
ED
NT seq 2349 nt NT seq  +upstreamnt  +downstreamnt
atgttgggtctgcgttcatgccactgtcttggccacaaccctctctctcgcagtctcaac
ctccgcttctctcctcctctttcggcctcattcaaatccttctctcttaattctttcttc
tcgtcaagccctaaccctaagactaaacctaaaccccaatctaaacgtaaacccaccatg
tcctctctcccctccgccttcgatgctctcatgtccaaagcccgagccgcggccaagaag
aagccccaatcccagtccgaatcccaatcccaatcctcgtctccgaagaagcgcaaaacc
caaactcaaaccccagaccttgccccacctaaaaaatctaccaattcccaaacccccgat
tccaagatcgaaccattggatgcgttgccggcgaagaaaccgaagaaggttgacgtcgaa
gagtgtattgggcaattgaggaaaaaggcggcggatttcaatcccaaaacggcggcgtat
tgggaggacaagccagttccatttctttttcttgtcagggcttttgatatgatttccaag
gagacgggtcggattgtgattacggatattgtgtgcaatatgttgaggacggtgatgcac
gccaccccggacgatttagtagcggttgtctatctttcagccaacaggattgcgccggcg
catgagggcttggagcttgggattggggatgcgtcaattattaaggcacttgcggaagcc
tgtggaagaaaagaagagcagattaagagccagtacaaggcattgggagatttggggctt
gttgcaaaagcatgccgatcatcccagtctctgatgcgcaagcctgatccattaaccgtt
gccaaggtttttaatacatttggacttattgccaaggaatctggaaaggatagtcaagag
aagaaaaagaaccatatcaagacacttcttgttgcagccaccgactgcgagccacagtat
ttaattcgtctacttcagacgaagttgcgaattggtttggcagagcaaactctgttaact
gcattgggacaagctgctgtatataatgacaaagagttgacacaaccacctccacatatc
cagtcgcctctagaggaggctgcaaatattgttaagcaatcgtactctgtacttcctgtt
tatgataaaatagtccctgctcttcttagcggtggtgtatggaatcttccaaagacatgt
agctttatgccaggtgtccctgttggacctatgctagcaaaaccaaccaagggggtatct
gaaatcattgataaattccaggatatggaattcacctgtgaatacaaatatgatggagaa
cgtgctcagatacactacaaggaggatgggtcagttgagatatatagtcgcaatgccgaa
cgaaatactggaaagtatcctgatgttgttgttgcagtttcaagattaaagaagtcatct
gtgagttcatttgttttggattgcgaactagttgcctatgaccgtcaaaaggggaaaatt
ttgccattccaggtcctcagcacccgtgctcgtaaaaatgtggttatgagtgaaatcaag
gttgatgtttgcatatttgcttttgacattttgtatcgtaatggccaaccacttcttcaa
gagcagctcaaaattcgtcgtgagcatctttatgagtcatttgaggaagaacctggattt
ttccagtttgcaacagcaataacatcaaatgatcttgaggaaatacaaaaattccttgaa
gctgctgttgataccagttgtgaaggcttgatcattaaaacattgaatggagatgctaca
tatgagccttcaaagcggtcacataactggctaaaattgaagaaagattacatggagaat
attggtgactcgcttgatctagtacctatagctgctttccacggtcgcgggaaacgtgca
ggtgtctatggtgccttcctccttgcttgttatgacagcaataaagaagaatatcaaagc
atttgtaaaataggcactggattttctgaggcagtgcttgaagaacgctcagccagtctt
cgttctaaagtgatttccagaccaaagccttactatcggtatgctgattcaattgatcca
gatgtatggtttgaacccactgaggtttgggaggtgaaagctgcagacttgaccattagc
cctgttcatcgtgctgcagttggaatagtggatcctaacaagggtatttctcttcggttt
ccacgtctggttcgcattcgagatgataagaatccagagcaagcgtcgtcatctgacttg
gttgctgagatgtataatggccaaaagctcaatcaccagtccaatcaagatgaaaatgaa
gaagactga

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