Vibrio vulnificus YJ016: VV0289
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Entry
VV0289 CDS
T00150
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
vvy
Vibrio vulnificus YJ016
Pathway
vvy03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vvy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VV0289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vvy03400
]
VV0289
Enzymes [BR:
vvy01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
VV0289
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
VV0289
DNA repair and recombination proteins [BR:
vvy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
VV0289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Zn_ribbon_SprT
Zn_Tnp_IS1595
Motif
Other DBs
NCBI-ProteinID:
BAC93053
UniProt:
Q7MPS3
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All DBs
Position
I:298883..299767
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AA seq
294 aa
AA seq
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MDCHFSFNRLFVSLLDIEHFDLGATMPELPEVEVSRMGITPHLLNQTIQSLIFRTPKLRW
VIPSELKKLQGQVIRHIGRRAKYLIIETDVGSAIVHLGMSGSLRVLDADFPAGKHDHVDL
KLSNGKVLRYNDPRRFGAWLYAAPGEDHDVLGNIGPEPLTDAFDGQYMFEKAQGKRVAVK
QFIMDNKIVVGVGNIYASESLFRSRILPTRATMSLSAEEWQRLVSHIKQTLQTAIEQGGT
TLKDFSQADGKPGYFAQELQVYGKAGESCPECGEAIQELKIGQRNTFYCSYCQC
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atggattgccatttcagtttcaaccgattatttgtttccctactagacattgagcatttt
gaccttggagccaccatgcctgaattaccagaagtggaagtgagccgaatgggcattacg
ccgcatttgctcaatcaaaccattcaatcactgattttccgtaccccaaaactgcgctgg
gtcattccaagtgagctaaaaaagctgcaagggcaagtgattcgtcatattggccgccga
gccaaatatctgatcatcgaaaccgatgtcggcagtgcgattgtgcatttaggcatgtcc
ggttcattgcgtgtgctggacgctgacttcccagctggcaaacacgatcacgtcgatctc
aaactctctaatggcaaagtgctgcgttacaacgatccacgtcgctttggtgcttggctt
tatgcagcgccaggggaagaccatgatgtgttgggtaatattggtccagagccgctaacg
gatgcttttgatgggcaatacatgtttgaaaaagcgcaaggtaaacgcgttgcggtgaag
cagtttattatggacaacaaaatcgtagtgggtgtggggaacatctatgccagcgaatct
ttgtttcgctcacgcatcctgccgaccagagcgacgatgtcactcagtgccgaggaatgg
caacgcttggtgagccacatcaagcaaaccttgcaaacggcgattgagcaaggtggcacg
acattgaaagacttttcccaagccgatggtaagccggggtattttgcccaagaattgcaa
gtgtatggaaaagccggagagtcatgcccagaatgcggcgaagcgattcaagagcttaaa
atagggcaacgcaataccttctactgttcttactgtcagtgctaa
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