Weissella tructae WS08: WS08_1122
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Entry
WS08_1122 CDS
T03228
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
wce
Weissella tructae WS08
Pathway
wce03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
wce00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
WS08_1122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
wce03021
]
WS08_1122
03400 DNA repair and recombination proteins [BR:
wce03400
]
WS08_1122
Enzymes [BR:
wce01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
WS08_1122
Transcription machinery [BR:
wce03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
WS08_1122
DNA repair and recombination proteins [BR:
wce03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
WS08_1122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AIG66061
UniProt:
A0A075U0N0
LinkDB
All DBs
Position
complement(1199083..1202745)
Genome browser
AA seq
1220 aa
AA seq
DB search
MIDVNKFESMQIGLASPNKIRSWSHGEVKKPETINYRTLKPEKDGLFDERIFGPTKDYEC
ACGKYKRIRYKGIVCDRCGVEVTTAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRSLEEIIYFASYVVTDAGDTPLVEKQLLSEREYREHKQQYGTGFKAGMGAEAIKALLA
NVDLEGEVTQLKAELREATGQKRIRAVRRLDIIEAFVKSGNKPEWMVMDVIPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLELNAPGIIVQNEKRMLQEAVDALVDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVGPFLKMNQMGLPVP
MAVELFRPFIMKELVEREMAGNIRAAKRKIDRRDDEVMDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPVLVSGKAMRLHPLVTEAYNADFDGDQMAIHVPLSDEAQAEARLLMLAAGHIL
APKDGKPIVAPSQDMVIGNYYLTTEEAGREGEGMIFKDINEARTALQNGYVHWHTRVGVQ
TSSFPADKPFTDEQRSRIMVTSVGKLLFNDILPTDFPYLNEPTEANLKGIDDRFFLEPGT
DVKAYLADTTILPPFKKGYLSDIIAEVYKIYKVTETSLLLDRMKDLGYADSTKSGLTVGV
ADVTELKEKPAIIEAAHEKVATVTKQFRRGLITDDERYERVIEIWNRAKDDITEKLIAHF
EVDNNIFMMSDSGARGNISNFSQLAGMRGLMAAPNGQIMELPIIANFREGLSVLEMFFST
HGARKGMTDTALKTADSGYMTRRLVDVAQDVIIREHDCGTDRGLDVAAIMNGNEVIEPLY
DRILGRFAQKTVVHPETGEVIVAHNQMIEEAEAKAIIEAGITSVNIRSAFTCNTEHGVCV
LDYGRNMATGDIVEVGEAAGTIAAQSIGEPGTQLTMRTFHTGGVAGNDITQGLPRVQEIF
EARNPKGRAMITEVTGEVKSIEENPAERTKEVTIEGETDTRTYTLPMAARMRVAEGDMIH
RGETLNEGSADPKEMIEVRDTLATENYLVDQVQMVYRMQGVEISDKHIEVMARQMIRKVR
VMDPGETDLLPGTLMDIAEFRTANEKPLIEGKLPATARPVLLGITKASLETNSFLSAASF
QETTRVLTDAAIRGKNDPLVGLKENVIIGKLIPAGTGMKQYQAVQPEVVGAPVVNNEDAT
KVPSIADIENTMNLEQEVID
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atgattgatgtcaataaatttgaaagcatgcaaatcggtttggcaagtccaaacaagatt
cgcagctggtcacatggtgaagttaagaagcccgaaaccatcaattatcgaacactaaag
cctgaaaaggatggattgtttgatgaacgaatctttggaccaaccaaggattacgaatgt
gcttgtggaaagtacaagcgtattcgttacaagggaatcgtctgtgaccgatgtggtgtt
gaagtaacaactgcaaaggtacgtcgcgaacgtatggggcacattgaattggctgctcca
gtttcacacatctggtacttcaagggaatcccatcacgtatgggtcttgtcttggacatg
tcaccacgttcactagaagagattatctacttcgcgtcatacgtggttactgatgccggt
gatacaccacttgttgaaaagcaattgttgtcagaacgtgaataccgcgaacacaagcaa
caatacggtactggcttcaaggctggtatgggtgcggaagccatcaaggcattgctagcc
aatgttgatcttgaaggtgaagttactcaattgaaggctgaattgcgtgaagcaactggt
caaaagcgtattcgtgccgttcgtcgtttggacattatcgaagcgttcgttaagtcaggt
aacaagcctgaatggatggttatggatgttattccagttatcccacctgacttacgtccg
atggtacaacttgaaggtggacgttttgccacttctgacttgaacgacttgtaccgtcgt
gtaattaaccgtaacaaccgtttgaagcgtttgctagaattgaatgccccaggtatcatc
gtgcaaaacgaaaagcgtatgttgcaagaagcggtcgatgctttggtcgataacggtcgt
cgtggacgtcctgttactggtcctggtaaccgtccgttgaagtcattgtcacacatgttg
aagggtaagcaaggacgtttccgtcaaaacttgcttggaaagcgtgttgactactctgga
cgttcagttatcgacgttggtccattcttgaagatgaaccaaatgggattgcctgtgcca
atggccgttgaattgttccgtccattcatcatgaaggaattggttgaacgcgaaatggcc
ggaaacatccgtgccgctaagcgtaagattgaccgtcgtgatgatgaagtgatggacgtg
ttggaagacgtaatcaaggaacacccagttctattgaaccgtgccccaactttgcaccgt
cttggaatccaagcgttcgaaccagtgttggtttcaggtaaggcaatgcgtttgcaccca
ttggttactgaagcgtacaacgccgacttcgacggagaccaaatggccattcacgtgcct
ttgtcagatgaagcccaagctgaagctcgtttgctaatgcttgccgctggtcacatcttg
gcacctaaggatggtaagcctatcgtggcaccatcacaagacatggttatcggtaactac
tacttgactactgaagaagcaggacgtgaaggtgaagggatgatctttaaggacatcaac
gaagcccgtactgctttgcaaaatggttatgttcactggcacacacgtgttggggttcaa
acatcatcattcccagcagacaagccatttaccgatgaacaacgttcacgcatcatggta
acaagtgttggtaagttgttgtttaacgacatcttgcctactgacttcccatacttgaac
gaacctacagaagccaacttgaagggtattgacgaccgtttcttcctagaaccaggaaca
gacgtgaaggcatacttggcagatacaactatcttgccaccattcaagaagggttacttg
tcagacatcattgctgaagtctacaagatctacaaggttacagaaacgtcattgctattg
gaccgtatgaaggaccttggttatgcagactcaactaagtcaggtttgactgttggggtt
gccgacgttactgaattgaaggaaaagccagcaatcattgaagcagcccatgaaaaggtt
gctacagtgacaaagcaattccgtcgtggtttgattacagatgacgaacgttatgaacgc
gttattgaaatctggaaccgtgctaaggacgacattactgaaaagcttattgcccacttc
gaagtggacaacaacatcttcatgatgtcagactcaggagctcgtggtaacatctctaac
ttctcacaacttgcgggaatgcgtggattgatggccgctcctaacggacaaatcatggaa
ttgccaatcatcgccaacttccgtgaaggactttctgttttggaaatgttcttctcaacc
cacggggctcgtaagggtatgaccgacacggccttgaagactgccgactcaggttacatg
actcgtcgtttggttgacgttgcgcaagacgttatcatccgtgaacacgattgtggtact
gatcgtggattggatgtagcggctatcatgaacggtaacgaagtgattgaaccactttac
gaccgtatcttgggacgtttcgcccaaaagactgttgttcaccctgaaactggtgaagtg
atcgtggcccacaaccaaatgattgaagaagcagaagctaaggcaatcattgaagctgga
atcacatcagtgaacattcgttcagccttcacttgtaacactgaacacggagtctgtgta
cttgactacggtcgtaacatggctacgggagatatcgttgaagttggtgaagctgcggga
actatcgctgctcaatcaatcggagaacctggaacacaattgacaatgcgtactttccac
acgggtggagttgccggaaacgacatcacgcaaggtcttcctcgtgtccaagaaatcttt
gaagcacgtaaccctaagggtcgtgcgatgattactgaggttaccggtgaagttaagtct
atcgaagaaaacccagcagaacgtactaaggaagtaaccatcgaaggtgaaactgataca
cgtacttatacactacctatggctgcacgtatgcgtgttgctgaaggggacatgatccac
cgtggtgaaacgttgaacgaaggttcagctgatcctaaggaaatgatcgaagttcgtgac
acacttgctactgaaaactacttggttgaccaagtgcaaatggtttaccgtatgcaaggt
gtggaaatctctgacaagcacatcgaagttatggctcgtcaaatgattcgtaaggttcgt
gtcatggatccaggtgagactgacttgttgccaggtactttgatggacattgcggaattc
cgtactgccaacgaaaagcctttgattgaaggtaagttgccagcgactgctcgtccagtc
ttgctaggtattactaaggcctcattggaaacaaactcattcttgtctgccgcttccttc
caagaaacaacgcgtgttcttacagacgccgctattcgtggaaagaacgacccattggta
ggtttgaaggaaaatgttattatcggtaagttgatccctgctggaactggtatgaagcaa
taccaagccgtacaacctgaagtggttggggcaccagttgtgaacaatgaagacgcgact
aaggtaccatctatcgctgatatcgaaaacacaatgaacctagaacaagaagtaatcgac
taa
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