Wallemia ichthyophaga: J056_000041
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Entry
J056_000041 CDS
T03457
Name
(RefSeq) putative DNA repair helicase ercc3
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
wic
Wallemia ichthyophaga
Pathway
wic03022
Basal transcription factors
wic03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
wic00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
J056_000041
09124 Replication and repair
03420 Nucleotide excision repair
J056_000041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
wic03021
]
J056_000041
03400 DNA repair and recombination proteins [BR:
wic03400
]
J056_000041
Enzymes [BR:
wic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J056_000041
Transcription machinery [BR:
wic03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
J056_000041
DNA repair and recombination proteins [BR:
wic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
J056_000041
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
DEAD
AAA_34
DUF1495
Motif
Other DBs
NCBI-GeneID:
20372993
NCBI-ProteinID:
XP_009265714
UniProt:
R9AR62
LinkDB
All DBs
Position
Unknown
AA seq
781 aa
AA seq
DB search
MADGINQDYLFGSHDYGDLPLKPDHPNRPLWVSPEDGHIILEGFSPIAEQAQDFLVAISE
PVSRTSLMEEYKITPYSLYAAVSVGLETDDIIEVLNRLSKVPVPASIVSFIKECTMSYGK
VKLVLKHNRYFVESAHADTLQMLLRDQIIKNARVDSNSHIETSSAPTKGDLVIPGTKEAQ
GTNNQSGQPNQPNQPDPPPENTTNEGEQQNKPDDKKKNTGDEYFTALIDIEKQDEMEDDE
EVHSFEIKSDEIETVKRRCNELEYPMLEEYDFHNDTRNPNLDIDLKPVTVIRPYQEKSLS
KMFGNGRARSGIIVLPCGAGKTLVGITAACTIKKSILVLCTSSVSVMQWKQQFMQWSNVN
DSQISVFTADQKEKFGGDSGIVVSTYSMVANTRNRSHESQKMMDFLTSREWGFILLDEVH
VVPAAMFRRVVTTIKAHSKLGLTATLVREDDKIDDLNFLIGPKLYEANWMDLAAKGHIAN
VQCAEVWCPMVPCFYREYLREKSRKRMLLYSMNPHKFQACQFLIDFHEDRGDKIIVFSDC
VYSLEQYARKLKKPYIHGGTSQVERMRVLQRFQFDSNVNTIFLSKVGDTSIDLPEATCLI
QISSHFGSRRQEAQRLGRILRAKRRNDEGFNAFFYSLVSTDTQEMFYSTKRQGFLVDQGY
AFKVITHLFGIERLPELVYRSEKEQIELLESVLLANESAADIGSDIKASEDDLAGTIHGV
TKRMTGSTSALAGGQAMSYIEKNKSANKQITKDSRHSLFKKRDKDAADRAKKKKQRLAGE
A
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atggcagatggcataaatcaggattatttattcggtagccacgattacggtgatctgcca
ctcaagccagatcacccgaatcgtccactttgggtgtcgccagaggatggtcatatcata
ttagagggattctcgcctatcgctgaacaagcacaggacttcttggtagcgatttcagag
ccagtcagtagaacaagccttatggaggagtacaagattacgccctactcgttgtacgcg
gccgtatctgttggattggaaacagacgatatcattgaagttcttaacagactctcgaaa
gtgcctgtacctgcctctatcgtttcctttatcaaggagtgtacaatgtcatacggtaaa
gttaagctggtacttaagcacaacaggtatttcgttgaatctgcccacgccgatacgctg
cagatgctgctccgtgatcagattatcaagaatgctcgtgtcgactcgaattcgcacatc
gaaaccagctccgcacccactaaaggcgatttagtcattcctggtacaaaagaagctcaa
ggtacaaacaatcagagtggtcagcctaatcagcctaatcaacctgatcctcctcctgaa
aacaccacaaacgaaggcgagcagcaaaacaaaccagacgataagaaaaagaacactggc
gacgaatactttaccgctctgatagatattgagaaacaggatgagatggaagacgacgaa
gaagtccactcctttgagatcaagtcggatgaaatcgaaaccgtcaagagaaggtgtaac
gagttggagtatccaatgttggaagaatatgactttcacaatgacacacgcaaccctaat
cttgatattgatttgaagcctgtgacagttattagaccgtatcaagaaaagtcattgagt
aagatgtttggtaacggcagagctagatccggtatcatcgttttgccttgtggtgctggt
aagacgcttgttggtattacagctgcgtgtacaatcaagaagtctatattagttctctgt
acgtcctccgtatccgttatgcagtggaaacagcaattcatgcagtggtccaacgtaaat
gacagccagatatcagtattcactgctgaccagaaggagaagtttggtggcgatagcggt
attgttgtctcaacttactcaatggtagctaatactcgcaatcgttcacatgagtcgcag
aaaatgatggacttccttacttcacgcgaatggggatttattttgttggatgaagtgcat
gttgtgcctgctgccatgtttagaagagtcgttacaacaataaaggcgcattccaagttg
ggtctgacggctacgcttgtcagagaggacgataagattgacgatcttaacttcctcatc
ggaccgaagctctacgaagcaaattggatggacttggccgccaaaggccacatcgccaat
gttcaatgtgctgaagtgtggtgtccaatggtcccatgtttctaccgagagtatctcaga
gaaaagagcagaaagcggatgttgctttattcgatgaatcctcacaagttccaggcttgt
caattcctcattgatttccatgaagacaggggcgacaaaattatcgtgtttagtgactgc
gtctatagtcttgaacagtacgctcgtaagctgaaaaaaccatatattcacggaggtact
tctcaagtagagagaatgagagttttacagagattccaattcgatagcaacgtcaacact
atcttcttgtcgaaagtcggcgatacgtcgattgatttacctgaggctacatgcctgatt
caaatcagtagtcactttggatctcgtagacaagaagctcagagattaggtcgtattctg
cgtgccaagcgtcgtaacgatgaggggttcaacgctttcttctactcgctggtatcgaca
gatacgcaagaaatgttttattcaacaaagagacagggtttcttggtagaccagggttat
gcgtttaaggtgataacgcacctgttcggtattgaaaggttaccagaactggtatacaga
tctgagaaagagcagattgagctactcgagtctgtactacttgccaatgaatcagcagca
gacataggatccgacattaaggcttcagaagatgacctggctggtacaatacacggagtg
actaagcgtatgacgggatcaacatcagctctggctggtggccaagccatgtcgtatatc
gaaaagaataagtctgcaaacaaacagattactaaggattcgagacactctttgtttaaa
aagcgcgacaaggacgcggcggacagagctaagaagaaaaaacagagactagccggagag
gcttag
DBGET
integrated database retrieval system
