Wallemia ichthyophaga: J056_001884
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Entry
J056_001884 CDS
T03457
Name
(RefSeq) mRNA 3'-end-processing protein YTH1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
wic
Wallemia ichthyophaga
Pathway
wic03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
wic00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
J056_001884
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
wic03021
]
J056_001884
03019 Messenger RNA biogenesis [BR:
wic03019
]
J056_001884
Transcription machinery [BR:
wic03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
J056_001884
Messenger RNA biogenesis [BR:
wic03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
J056_001884
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCHC
zf-CCCH_4
zf-CCCH_3
zf-CCHC_3
zf-CCHC_5
zf-CCHC_2
Lustrin_cystein
Motif
Other DBs
NCBI-GeneID:
20374836
NCBI-ProteinID:
XP_009269787
UniProt:
R9AAT4
LinkDB
All DBs
Position
Unknown
AA seq
326 aa
AA seq
DB search
MAQTQTVPNFDKFNFQLERFAKQELGLKLDRDTQICQDNLTATGCPRGYSCPYRHTDPAP
KNFEPLPLLPTNIRERERAVTVCKHWLRGLCKKGDACEFLHEYDLRKMPECWWFVKWGWC
ANGEECLYRHTSKEGRKNECPEYLRGFCKRGPFCPFKHVRRAACAAYLAGYCPDGPECGL
GHPKSTLPKPYSLEDADPPPVPDPELGPPPGYMGYSYERGPWESRRFGAGFGGEPGQGIA
HGIGPGGVSHGRPQSYKGEKMVMPNSGSGPGEPFIRNVNQKPRDSQNAQVRRGLENILCF
KCGQHGHYANQCPNKMAQGRQRQPQN
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagacacagacagtgcctaattttgataaatttaatttccagttggagagattt
gctaagcaggagctgggattgaagctggatagagatacgcagatatgccaggataacctc
acagcgacgggatgtccacgcggctacagctgtccttatcggcatacagatcccgcgccg
aagaatttcgagccattgccgctgctgcccaccaacatacgcgagagagagcgcgctgtt
acagtctgcaagcactggcttaggggtttgtgcaagaagggcgacgcttgcgagttcctc
cacgaatatgacctcaggaagatgcctgaatgctggtggtttgtgaaatgggggtggtgc
gctaacggagaagaatgtctatacagacatacaagcaaggagggtcgtaagaacgagtgc
ccagagtacttgcgcggtttttgcaaaagaggtcctttctgtccattcaagcacgtacgg
cgagctgcatgtgcagcgtatcttgctggttattgtccagatggtcctgaatgtggactt
ggacatccaaaatcaacactaccaaagccatacagcctagaagacgcagatccaccacca
gtacctgatcctgaactcggacctccacctggatacatgggttactcatatgagagagga
ccttgggagtcgcgtagattcggtgcaggctttggtggtgagcctggtcaaggaatcgcg
catggaattggtccaggtggagtgagtcatggtagaccacagtcttataaaggagagaag
atggttatgccgaatagtggatcaggccctggagagcctttcatcagaaatgtaaatcag
aagccacgggacagtcaaaatgcacaagtgcgacgtggattagagaacatattgtgcttc
aagtgtggacagcacggccactacgccaatcaatgtccaaataagatggcacaaggacga
caaagacagccgcagaactga
DBGET
integrated database retrieval system
