KEGG   Winogradskyella sp. J14-2: BWZ20_02900Help
Entry
BWZ20_02900       CDS       T04714                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
wij  Winogradskyella sp. J14-2
Pathway
wij03030  DNA replication
wij03410  Base excision repair
wij03420  Nucleotide excision repair
wij03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:wij00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BWZ20_02900
   03410 Base excision repair
    BWZ20_02900
   03420 Nucleotide excision repair
    BWZ20_02900
   03430 Mismatch repair
    BWZ20_02900
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:wij03032]
    BWZ20_02900
   03400 DNA repair and recombination proteins [BR:wij03400]
    BWZ20_02900
Enzymes [BR:wij01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BWZ20_02900
    6.5.1.6  DNA ligase (ATP or NAD+)
     BWZ20_02900
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     BWZ20_02900
DNA replication proteins [BR:wij03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    BWZ20_02900
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     BWZ20_02900
DNA repair and recombination proteins [BR:wij03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     BWZ20_02900
   NER (nucleotide excision repair)
    Other NER factors
     BWZ20_02900
   MMR (mismatch exicision repair)
    Other MMR factors
     BWZ20_02900
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: APY07313
UniProt: A0A1P8RU19
LinkDB All DBs
Position
complement(618899..620488)
Genome map
AA seq 529 aa AA seqDB search
MKLFSELISAIEITNKTNAKIEALVQYFKTAPDKDKLWLIALFTGKRPSRPVKTSLMKAW
CIEIVDLPEWLFLESYSTVGDLGETMALLLPQPSYKLDLSLHEWMTELKALKPKPEVEKK
NFVLNAWSGLDKQERLIFNKLIGGSFRIGVSKKTLVNALAKLTNIDPNKLMHSIIGNWEV
DSISFEDLIRGSHINYDNSKPYPFCLAYALEKDLAELGDSKEWTVEQKWDGIRGQIVKRN
NEIYIWSRGEELVTKQFPELVEAMQNFKEDIVLDGEILAMKDNDVLLFNDLQKRLNRKNV
TKKLLKEVPIGFFAYDLLEFEGVDIREKPFIERRRQLEFIFNSVALPEHIKLSFLVKFNK
WEELHQIRNNSRTLNSEGLMLKQKHSPYHTGRKKGDWWKWKVDPLTIDAVMIYAQKGSGR
RSSKYTDYTFAVKKDDALVTVAKAYSGLTDKEITEISQWVNKNAIEKFGPVRTVKPELVF
EIAFEGIALSNRHKSGVALRFPRIARWRKDKPVDDIDTIESVKALINTN
NT seq 1590 nt NT seq  +upstreamnt  +downstreamnt
atgaagttgttttcagaattaataagtgccatagaaattacaaataaaactaatgctaag
attgaagcattagtccaatattttaaaacagcaccagacaaagacaaactttggctaatc
gctttatttacaggaaaaagaccgtcgagaccagtaaaaacatcactgatgaaagcatgg
tgcatcgagattgtagatttaccagaatggttgtttttagaaagctatagtacggtagga
gatctaggcgaaaccatggcattattacttccacaaccgagctataaattagacttatcc
ttacatgaatggatgactgagttaaaagcattaaaaccaaaacctgaagtagagaaaaaa
aattttgtactaaacgcttggtctggactagacaagcaagaacgtctcatttttaataaa
ttaataggtgggagttttagaattggcgtttcaaaaaaaaccttagtaaacgcattggct
aagctcaccaatatagatcctaataaattgatgcatagtataataggtaattgggaggtg
gattcaatttcatttgaagacttaatacgcggaagtcatataaattacgataattctaaa
ccataccctttttgtttagcgtacgccctagagaaagatttggcagaacttggagactct
aaagaatggacggttgagcaaaaatgggatggtatacgagggcagatcgtaaagcgaaac
aatgaaatttacatttggtctcgaggcgaagaattggtgacaaaacagtttccagaactt
gtagaagcgatgcaaaattttaaagaagatattgttttagacggcgaaatactagccatg
aaggacaatgatgttttactttttaacgatctgcaaaaacgacttaaccgtaaaaatgtt
accaaaaaactattaaaagaggtgccaataggtttttttgcatacgatctattggagttt
gaaggagtagatattagagaaaaaccatttatagaaagaagaagacaactagaattcatt
tttaattctgttgctttgccagaacatattaaattatcctttttagttaaatttaataaa
tgggaagaattacaccaaatcagaaataattccaggaccttaaatagcgaaggattaatg
ttaaagcaaaaacattccccataccatacaggtagaaaaaaaggagattggtggaaatgg
aaagtagatccactaactatagatgctgttatgatatatgctcaaaagggcagtggtcgc
cgtagttcaaaatatacagattatacctttgccgttaaaaaagatgatgctctagttaca
gtagcaaaagcatattctggattaacagataaggaaatcaccgaaatctcgcagtgggtt
aacaaaaatgcaatagaaaaatttggacctgtaagaacagtaaaaccagaattagttttt
gaaatagcttttgaaggcattgcgctaagtaatcgccataaatcaggtgttgccttaaga
ttcccacgaattgccagatggagaaaagataagcctgtggatgacatcgataccattgaa
tcggtgaaagcgctaataaatacgaattaa

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