Weissella paramesenteroides: CO680_08805
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Entry
CO680_08805 CDS
T05120
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
wpa
Weissella paramesenteroides
Brite
KEGG Orthology (KO) [BR:
wpa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
wpa03009
]
CO680_08805
Enzymes [BR:
wpa01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
CO680_08805
Ribosome biogenesis [BR:
wpa03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
CO680_08805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
MTS
Methyltransf_25
Methyltransf_15
Cons_hypoth95
A_deaminase
RrnaAD
Dsc3_N
Motif
Other DBs
NCBI-ProteinID:
ATF42133
LinkDB
All DBs
Position
1779408..1780859
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AA seq
483 aa
AA seq
DB search
MENKQHKKYNNHQQFKKGDHVSRGTKKRNNAPVQVEIGDQLLITIKRLGINGEGIGYYKR
KITFIPGALPGEVVEVEVTNVTEKFIEANIHKFKQKSKQRVTPVDNQEVGGFELEHLAYD
GQLTFKQDVIRQALEKYKPAGYAHYKLLPTIGMDDPKEYRNKAQFPVREVDGELAVGMYK
RHSHKLVDLPVVTTQHPATLKVVRGVRDILADMQLPIYNERKNKGIVKTLIARVSESTGD
VQLTIVTNGRSLPDADELINRIHQALPEVVSIHQNINRGQSSLIWGDDTRQIWGEDYITE
EINGKTFKLSPRAFLQLNPRQTQRLYQEAIKALDLTKADKLIDAYSGVGTIGISLADHAG
EVRGMDTVAESIDDANENAIDNHVTNATYYVGAAEELIPQWTQEGWIADAVVVDPPRTGL
DIALRQTILETKPEKFVYVSCNASTLARDLVDLAKVYRVDYIQSIDMFPQTARWEGIVKF
TKK
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atggaaaataaacaacataaaaaatataataatcaccaacagtttaagaagggtgaccat
gtttcacgtggaacaaaaaaacgcaataatgcaccagtacaggttgagattggtgatcag
ttattaattacgattaaacgtttaggtattaatggcgaaggaattggttattataagcgt
aagataactttcattccgggtgctttgccaggcgaagttgttgaggttgaagtaacgaac
gtcactgaaaaatttatcgaagcaaacattcataaatttaaacaaaagtcaaagcaacgt
gtaaccccagttgataatcaagaggttggtggttttgagttggaacatttggcgtatgac
ggtcaactgactttcaaacaagatgttatccggcaggcattagaaaagtacaagccagct
ggctatgcacattataaattattgccaacgataggtatggatgatccaaaggaatatcgt
aataaagcgcagttccctgttcgtgaggttgatggtgagttagctgtggggatgtataag
cgtcattcacataaattggttgatttaccagttgttacgacgcaacatccggctacgcta
aaagttgttcgtggcgtgcgtgatattttggcagatatgcagttgccaatttataatgag
cggaaaaataaaggtattgtaaaaacgttaattgcacgtgtttcagaatctactggggat
gtgcagctgacgattgtaaccaatggtcgatcactaccagatgcggatgagttaattaac
agaattcatcaggcattgcctgaagttgtatctattcatcaaaatattaatcgtggacaa
tcttcattaatttggggtgatgatacacgtcaaatctggggtgaagattatattactgaa
gaaattaatggtaaaacattcaagttatcacctcgggcatttttgcaattaaatccgcgc
caaacacaacgtctgtatcaagaagcaattaaagctttagacttgactaaggcagataaa
ctaattgatgcttattctggtgttggtacaattggtatttcgttagctgatcatgctggt
gaggttcgcggaatggatacggtggcagagtctattgatgatgcgaatgaaaatgccatt
gataatcacgtgacgaatgctacttattatgttggtgcagctgaagagttgataccacag
tggacgcaagaaggctggattgcagatgcagtcgttgttgatccgccacgtacaggatta
gatattgccttacgacaaactattctagaaacaaagccagaaaagtttgtttatgtttct
tgtaatgcatcaacccttgcccgtgatttagttgatttggcaaaggtttatcgcgttgat
tatattcaatctattgatatgttcccgcaaacggcacgttgggaaggtatcgtaaaattt
acgaagaaataa
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