Xanthomonas sp. ISO98C4: AC801_07925
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Entry
AC801_07925 CDS
T06033
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
xan
Xanthomonas sp. ISO98C4
Pathway
xan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AC801_07925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xan03019
]
AC801_07925
03016 Transfer RNA biogenesis [BR:
xan03016
]
AC801_07925
Enzymes [BR:
xan01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AC801_07925
Messenger RNA biogenesis [BR:
xan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AC801_07925
Transfer RNA biogenesis [BR:
xan03016
]
Prokaryotic type
tRNA degradation factors
AC801_07925
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_20
HTH_11
RNase_II_C_S1
HTH_24
Motif
Other DBs
NCBI-ProteinID:
AZU29788
UniProt:
A0A3Q9PZW9
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All DBs
Position
1850451..1852979
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AA seq
842 aa
AA seq
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MTKKKTPDSDRPSRRKSTGAGDSSTAEQQKLPGWMPDFLVRAAAGASTKSANKRAADKAS
NPSKASPQPATAPPAPRAPHPRKSGPSAPPPERFQTAAPATAEFKDPHAEREALRYAEPI
ASREAILQLLEACDGPQTAEEIAEQLNLSGRIDALGKRLAAMVREAQLVQNRRGGYAPVQ
QTSLIAGVVIANPEGFGFLKPDEGGDDLFLPPFEMRKVMHGDRALANVTGIDRRGRREGA
IARVLERGMSRMLGRFFYEHGVAYVDPDDKRIQRNVQIAPDGIGEAREGQLVVCELIAPP
DARRPAIGKIIAVLGDKLTPSLVVEMAIHGHELPHEFPQEVLDEAAAVPLVVEPQMIGGR
VDLRQMPLVTIDGEDAKDFDDAVYCESNADGFRLVVAIADVSNYVRPGTPLDDEAQKRAT
SVYFPGFVVPMLPETLSNGICSLMPKVDRMCFVCDMQVGRDGEVTGSRFYEAVMNSHARL
TYNQVWKAVGEDDADTKAFIGPLLPQVQRLHQLYHVLSKARTQRGAIEFETSEVRFVLDN
TGEVTQAGMLVRNDAHKLIEECMIAANVEAARYLLSVHVPAPYRVHERPPESKYEDLLEF
LKEFQLSLPAWSKVRPGDYTKLLKKVRARPDAALLESVLLRSQSLAVYSPENNGHFGLAL
EAYAHFTSPIRRYPDLLVHRAIKHALTGASPEKFIYTPRQMAALALQCSERGRRADEAER
EVDERYRAAWMEKHVGGQFDGVISGVTGFGLFVELTQSKVNGLVHVTQLPQDYYQFDPIR
KTLSGERRGREFRLGDPVRVLVLKASMEERKIDFRLAEENGAAPEAPLPPREKPTKRKKK
SY
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagaaaaaaaccccagattccgatcggccgagtcgccgcaaatccaccggcgca
ggcgattccagcactgccgaacagcagaagttgccgggctggatgccagacttcctggtc
cgcgccgcagccggcgcatcgaccaagtccgccaacaagcgcgctgccgacaaagcatcc
aacccctccaaagcctcgccgcagccggcgaccgcgccgcctgcgccgcgcgctccgcat
ccgcgcaagagtggcccgtctgcgccgccgccggaacgcttccagaccgctgcgcctgcg
actgccgaattcaaggatccgcatgcagagcgcgaggcgcttcggtatgccgagccgatt
gccagccgcgaggccatcctgcaattgcttgaagcctgcgacggtccgcagaccgccgaa
gaaattgccgagcagctcaatctgagcggccgcatcgatgcgttgggcaagcgcctggcc
gcaatggtgcgcgaagcgcaactggtgcagaaccgccgcggcggctacgcgccggtgcag
cagaccagcctgatcgccggtgtggtcatcgccaatccggagggcttcggtttcctcaag
cccgacgagggcggcgatgacctgttcctgccgccgttcgaaatgcgcaaggtcatgcat
ggcgaccgcgcgctggccaatgtcaccggcatcgaccgccgcggccgtcgcgaaggcgcc
atcgcgcgcgtgctcgagcgtggcatgtcgcgcatgctggggcgttttttctatgagcac
ggtgtggcttacgtcgaccccgacgacaaacgcatccagcgcaatgtgcagatcgccccg
gacggtatcggcgaggcacgcgaaggccaattggtggtttgcgaactgatcgcgccgccg
gacgcgcgccgcccggcgatcggcaagatcatcgcggtgctgggtgacaagctgacgccg
tcgctggtggttgaaatggccatccacggccacgaactgccgcacgaattcccgcaggaa
gtgctggacgaagccgcggccgtgccgctggtggtcgagccacagatgatcggtgggcgc
gtggacctgcggcagatgccactggtcaccatcgatggcgaagacgccaaggatttcgat
gacgcggtgtattgcgagtccaacgccgacggcttccgtctggtggtggcaatcgccgat
gtgtccaactacgtgcgtcccgggacgccgctggacgacgaagcgcaaaagcgtgccacc
tcggtgtatttccccggcttcgtggtgccgatgctgccggaaacgctgtccaacggcatc
tgctcgctgatgcccaaggtcgaccgcatgtgtttcgtctgcgatatgcaggtgggccgc
gatggcgaagtgaccggctcgcgcttctacgaagcggtgatgaattcgcacgcacgcctg
acctataaccaggtgtggaaggcggtgggcgaggacgatgccgacaccaaggccttcatc
ggcccgctgttgccgcaggtgcagcgcctgcatcagctgtatcacgtgctgtcgaaggcg
cgcacgcagcgcggggcgatcgagttcgaaacctccgaagtgcgcttcgtgctcgacaac
accggcgaagtcacccaggccggcatgctggtgcgcaacgatgcccacaagctcatcgaa
gaatgcatgatcgccgccaatgtcgaggcggcgcgctacctgctgagcgtgcatgtgccc
gcgccttaccgtgtgcatgagcgcccgccggagagcaagtacgaagacctgctggagttc
ctcaaggagttccagctgagcttgccggcatggagcaaggtgcgccccggcgactacacc
aagttgctgaagaaagtgcgcgcccgcccggatgcggcgttgctggaatcggtgttgctg
cgcagccagagcctggcggtgtattcgccggagaacaacggccatttcggtctggcgttg
gaggcatacgcgcattttacctcgccgatccgccgttatcctgacctgctggtgcaccgc
gcgatcaagcacgcgctgaccggcgccagcccggaaaaattcatctacacgccgcggcag
atggcggcactggcgctgcaatgctccgagcgtggacggcgtgccgatgaagccgagcgc
gaagtggatgagcgctaccgcgcagcgtggatggaaaagcacgtcggtggccagttcgat
ggcgtgatcagcggtgtgacaggatttggtttgttcgtggagttgacgcagtccaaggtc
aacggactggtgcatgtcacgcagctgccgcaggactattaccagttcgatccgattcgc
aagacgctcagcggcgagcgccgtggtcgcgagttccgccttggcgacccggtgcgcgtg
ctggtgctcaaggccagcatggaggagcgcaagatcgacttccgcctggccgaagaaaat
ggcgcagcgcccgaagcgccgctgccgccacgcgagaagccgaccaagcgcaaaaagaaa
tcgtactga
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