Xanthomonas axonopodis pv. citrumelo F1: XACM_3707
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Entry
XACM_3707 CDS
T01616
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
xax
Xanthomonas axonopodis pv. citrumelo F1
Brite
KEGG Orthology (KO) [BR:
xax00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xax03032
]
XACM_3707 (topA)
03400 DNA repair and recombination proteins [BR:
xax03400
]
XACM_3707 (topA)
Enzymes [BR:
xax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
XACM_3707 (topA)
DNA replication proteins [BR:
xax03032
]
Prokaryotic type
DNA Topoisomerases
XACM_3707 (topA)
DNA repair and recombination proteins [BR:
xax03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
XACM_3707 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
AEO43951
LinkDB
All DBs
Position
4291210..4293702
Genome browser
AA seq
830 aa
AA seq
DB search
MPKHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPDNGFAMRYDLIEKN
EKHVEAIARAAKSADDIFLATDPDREGEAISWHIAEILKERGLLKDKPMQRVVFTEITPR
AIKEAMAKPRMIAGDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIV
EREEEIEAFIPREYWSIDAHCRHPSQAFNARLIKLDGQKFEQFTVTDGDTAEAARLRIQQ
AAQGVLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGVALGDE
GSVGLISYMRTDSVNLSQDALAEIRDVIARDFGTASLPDQPNAYTTKSKNAQEAHEAVRP
TSALRTPAQVARFLSEDERRLYELIWRRAVACQMIPATLNTVSVDLSAGSEHVFRASGTT
VVVPGFLAVYEEGKDTKSSEDEDEGRKLPLMKAGDNVPLDRIVTDQHFTQPPPRFTEAAL
VKALEEYGIGRPSTYASIIQTLQFRKYVEMEGRSFRPTDVGRAVSKFLSGHFTRYVDYDF
TANLEDDLDAVSRGEAEWIPLMEKFWGPFKELVEDKKDSLDKTDAGSVRVLGTDPKSGKE
VSARIGRFGPMVQIGTVEDEDKPTFASLRPGQSIYSISLEDALELFKMPRLLGQDQDQDV
SVGIGRFGPFARRGSTYASLKKEDDPYTIDLARAVFLIEEKEEIARNRVIKEFDGSDIQV
LNGRFGPYISDGKLNGKIPKDREPASLTFEEVQQLLADTGKPVRKGFGAKKATLKKNTVK
DSAPKKPAVKKTATKTAASKTAVKKAPAKKTAAKKAAKRVVKKVVSKAAG
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgcccaagcacctgctcatcgtcgaatcgcccgccaaggccaagacgatcaataaatac
ctcggcaaggacttcaccgtcctggcctcgtatgggcacgtgcgcgacctggtccccaag
gaaggcgcggttgatccggacaacggctttgcgatgcgttacgacctgatcgagaagaac
gagaagcacgtcgaagccattgcgcgtgccgccaagagtgccgacgacatctttctggcg
accgacccggaccgcgagggcgaggcgatcagctggcacatcgccgagatcctgaaagag
cgcggcctgctcaaggacaagccgatgcagcgggtggtgttcaccgagatcaccccgcgc
gcgatcaaggaggcgatggcaaagccacgcatgatcgccggcgacctggtggatgcgcag
caggcgcgccgcgcgctcgattacctggtcggcttcaacctctcgccggtgctgtggcgc
aaggtgcagcgcggcctgtccgctggccgcgtgcaatcgccggcgctgcgcatgatcgtc
gagcgcgaagaagagatcgaagccttcatcccgcgcgaatactggtccatcgacgcgcac
tgtcggcatccctcgcaggcgttcaatgcgcggctgatcaagctggacgggcagaagttc
gagcagttcaccgtgaccgacggcgacaccgccgaggcggcgcgcctgcgcatccagcag
gccgcgcaaggcgtgctgcatgtcaccgacgtggccagcaaggagcgtaagcgccgcccc
gccccgccgttcaccacctccacgctgcagcaggaagcctcgcgcaagctcggcttcacc
acccgcaagaccatgcaggtggcgcagaagttgtacgaaggcgtggcactcggcgacgaa
ggctcggtcggtctgatcagctacatgcgtaccgactcggtgaacctgtcgcaggacgcg
ctggcggaaatccgcgatgtgatcgcgcgcgatttcggcaccgcctcgctccccgaccag
cccaacgcctacaccaccaagtccaagaacgcgcaggaagcccacgaagcggtgcgcccg
acctccgcgctgcgcacgcctgcgcaagtggcgcgcttcctgtccgaggacgagcgccgc
ctgtacgagctgatctggcgccgcgcagtggcctgccagatgattccggccacgctcaat
acggtcagcgtggacctgtcggccggcagcgagcacgtgttccgcgccagcggcaccacc
gtggtggtcccgggctttctggccgtgtacgaagaaggcaaggacaccaagagcagcgag
gacgaggacgagggccgcaagctgccactgatgaaggccggcgacaacgtcccgctggac
cgcatcgtcaccgatcagcacttcacccagccgccgccgcgcttcaccgaagcggcgctg
gtcaaggcgctggaggaatacggcataggccgtccttccacctatgcctcgatcatccag
accctgcagttccgcaaatacgtcgagatggaaggccgcagcttccgccccaccgacgtc
ggccgggcggtgtccaagttcctgtccgggcatttcacccgctatgtcgattacgacttc
accgccaatctggaagacgatctggatgcggtgtcgcgcggcgaagccgagtggatcccg
ttgatggagaagttctggggcccgttcaaggaattggtcgaagataagaaagactcgctg
gacaagaccgatgccggcagcgtgcgcgtgctcggcaccgacccgaaaagcggcaaggaa
gtcagcgcgcgcatcggccgcttcggcccgatggtgcaaatcggcacagtcgaagacgag
gacaagcccaccttcgcgtcgctgcgtcctggccagagcatctattcgatctcgctggaa
gacgcgctggaactgttcaagatgccgcgcctgctcggccaggaccaggaccaggacgtc
agcgtgggcatcggccgtttcggcccgttcgcgcgccgcggcagcacctatgcctcgctg
aagaaggaagacgacccctacaccatcgacctggcgcgcgcggtcttcctgatcgaagag
aaggaagagatcgcacgcaaccgggtgatcaaggaattcgacggcagcgacatccaggtg
ctcaacggacgtttcggcccgtacatcagcgacggcaagctcaatggcaagatccccaag
gatcgtgagccggcgtcgttgacgttcgaagaagtgcagcagctgctagccgacaccggc
aagcccgtgcgcaagggctttggcgccaagaaggccaccctgaagaagaatacggtcaag
gattcggcgccgaagaagcctgctgtcaagaagaccgcgaccaagaccgcagccagcaag
accgccgtcaagaaggcgccggccaagaagaccgctgccaagaaggccgccaagcgcgtg
gtcaagaaagtcgtgagcaaggccgcaggctga
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