Ahniella affigens: C7S18_05025
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Entry
C7S18_05025 CDS
T05483
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
xba
Ahniella affigens
Pathway
xba03030
DNA replication
xba03410
Base excision repair
xba03420
Nucleotide excision repair
xba03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C7S18_05025 (ligA)
03410 Base excision repair
C7S18_05025 (ligA)
03420 Nucleotide excision repair
C7S18_05025 (ligA)
03430 Mismatch repair
C7S18_05025 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xba03032
]
C7S18_05025 (ligA)
03400 DNA repair and recombination proteins [BR:
xba03400
]
C7S18_05025 (ligA)
Enzymes [BR:
xba01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C7S18_05025 (ligA)
DNA replication proteins [BR:
xba03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C7S18_05025 (ligA)
DNA repair and recombination proteins [BR:
xba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C7S18_05025 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C7S18_05025 (ligA)
MMR (mismatch excision repair)
DNA ligase
C7S18_05025 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C7S18_05025 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Auto_anti-p27
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AVP96602
UniProt:
A0A2P1PP38
LinkDB
All DBs
Position
complement(1347188..1349308)
Genome browser
AA seq
706 aa
AA seq
DB search
MVIAYIMTPEQHIKSLRAQLADANYRYYVLDAPSIPDAEYDRLMRELSALEAAHPEFADA
NSPSQRVGGEASGTFAPVQHDVPMLSLGNAFSAEDVADFVRRIRDTLSLEQPEFSVEPKL
DGLAISLRYEHGRFVRGATRGDGSTGEDVTANLRTIRAIPLELRGTHLPAVLDVRGEVFM
KKADFDAYNEQALSRGDPTLANPRNGAAGSLRQKDPRMTAQRPLSFYAYGLGAVSGWAVP
ERHSDMLQALRTFGLPVSPEVDRAVGEDGLLAYFSRIGGKREKLPYDIDGVVYKLDQRDQ
QEQMGYVSRAPRWAIAHKFPALEEMTTVEGIDVQVGRTGALTPVARLKPVRVAGVTVTNA
TLHNENEIRRKDVRIGDTVIVRRAGDVIPEVVGVVLEQRPADTQPFLMPETCPVCGAPVV
REAEQAVIRCSNGPAACPAQLREALRHFAGRRAMDIEGLGDETIADMVTLPFLRLPFLQT
GTNAQALRSMADLYRLTLDDLLELKRLQDARDGIVPDPRKKPTTRWADNLLAAIDKSRNS
SLPRLLYALGIRDVGESTAKTLYQHLGSVDNLLGADLDRLQAIPDVGPVVAKRIADWTAQ
AENRQLIADLRAAGVRFPEGQASAGGGPLSGKTVVLTGSLQGFTRDDAGARLEALGAKIS
GSVSKKTSFVVAGAEAGSKLAKAEELGIQVLDEAGLIALLNAHESA
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atggtgattgcttacatcatgacgccagaacaacacatcaagtcgctgcgtgcacagctc
gccgacgccaactatcgctattacgtgctggatgcgcccagcatcccggatgccgagtac
gaccgactgatgcgggagctcagcgcattagaagcagcgcaccctgaatttgcagacgcc
aactcgccaagtcagcgggtcggcggcgaggcttcgggcacctttgcgccagttcagcac
gacgtgcccatgctgtcgctcggcaatgcgttcagtgccgaagatgtggctgactttgtg
cgccggattcgcgacacattgagtctggaacagcccgagttttcggtcgagcccaagctt
gatggactcgccatcagccttcgctatgaacacgggcggttcgtacgcggtgccacgcgt
ggcgatggcagcacgggcgaggacgttacggcgaatctgcgtacgatccgggccatcccg
ctggaactgcgtggcacgcatttgccggcggtgctcgatgtgcgtggcgaagtgttcatg
aagaaggccgactttgatgcgtacaacgagcaggccttgtcgcgcggcgatcccacactg
gcgaacccccgcaatggtgccgccggttcgctacgccaaaaagacccgcggatgactgca
caacggccgttgtcgttttatgcgtacggacttggcgcggtctccggctgggcggtgccc
gagcggcattccgacatgctccaggcgctccgcacgtttggtttgccagtcagtccggag
gttgatcgtgcagtcggtgaggacggactgctggcctacttcagccgcattggcggcaag
cgcgagaaactgccctacgacatcgatggtgtggtctacaaactcgaccagcgcgaccag
caggagcagatgggctatgtctcgcgggcgccgcgctgggcgattgcacacaagtttccg
gcactcgaagaaatgaccacggtcgagggcattgatgtgcaagtaggccgtacgggcgct
ctgacgcccgtggcccgcctcaagcccgtgcgcgtagcgggcgtgacggtgacgaacgcc
acgttgcacaacgagaacgagatccgtcgcaaagatgtgcgcattggcgacacggtcatt
gtccgccgtgctggcgatgtcattcccgaagtggtgggcgtggtgttggaacaacgcccg
gctgacacgcaaccgttcctgatgcccgaaacctgcccggtttgcggcgcaccggtagtc
cgggaggccgaacaggccgtcattcgatgcagtaatggcccggcagcatgtccggcccaa
cttcgcgaggcattgcgacactttgccggccgtcgtgcgatggatatcgaaggtttgggc
gacgaaaccattgccgacatggtgactctgccctttctgcgactgccctttctgcaaacg
ggtaccaacgcacaagcattgcgatcgatggccgatctgtatcgcctgacgctcgatgat
ctcctcgaactgaagcggctccaggacgcccgcgatggcatcgtcccagacccgcgcaag
aagccgacaacgcgctgggccgacaacctgctcgccgccatcgacaagagtcgcaacagc
agtttgccgcgcctcttgtacgcgctcggtattcgcgacgtgggtgaatccacagccaaa
acgctgtatcagcacttgggctcggtcgacaatcttttgggcgctgatctggatcgactc
caggccattcccgatgtcgggccggttgtcgccaagcgaatcgcggactggacggcacag
gccgaaaaccgccagctgatcgcggatctccgtgccgctggtgtgcgattcccagaaggc
caagcgagcgctggaggcggcccgctgagtggcaagacggtggtgctgacgggcagtctg
caaggctttacccgcgacgacgccggcgcgcgtctggaagcgctgggggccaagatctct
ggatcggtttccaagaagaccagttttgtcgtcgctggtgctgaagccggttcgaagctc
gcaaaggccgaggaactgggcattcaagtactcgatgaagccggcctgattgcattgctt
aacgcacacgagtcggcatga
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