KEGG   Xanthomonas campestris pv. campestris 8004: XC_0109Help
Entry
XC_0109           CDS       T00247                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
xcb  Xanthomonas campestris pv. campestris 8004
Pathway
xcb03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:xcb00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    XC_0109
Enzymes [BR:xcb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     XC_0109
DNA repair and recombination proteins [BR:xcb03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     XC_0109
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: AAY47200
UniProt: A0A0H2X2G3
LinkDB All DBs
Position
126994..129999
Genome map
AA seq 1001 aa AA seqDB search
MSLRDYTRKRRFDQTPEPAEDAAATAHRQPIFVVQLHHASSRHYDFRLEADGVLKSWAVP
KGPSLRAGEKRLAVQVEDHPLAYAGFEGDIPQGQYGAGHVQVFDHGTWHCDGDALAALDA
GKLDFDLQGDKLRGGFALVRTRLRGRQPQWLLIKRDDAHAADLDADALVADSDATAQAIE
TPSAAAAPARRAKASRRRRTPAEALVTEKSASASRPRASAATQAHWRTRALALPGARDAA
CPTGLRAQLTLLRAEAPDGAQWPHEIKWDGYRLLTDLVDGRAQLRSRNDQAWTDSFPEVA
TAVQALPVRDARLDGELVVLDAQGRSDFSALQRAIDGTARQPLRYLVFDLLGVAGVDLRA
TPLLERKQLLRALLGETPGTLAYSAHVIGRGPEVFAASADKGWEGIVSKRADAPYRGGRS
ADWVKTKHEDSDEFVVVGYTDPKGARSGFGALLLAQLDGTQLRYVGRVGTGFDSALLGEI
TAQLQALHSPQPTLELPAHIPSRPRDVHWVRPVLIAEVAFRGWAKQGLLRQAAFKRLRED
KPMSDLGGDRATPGKSRGARTRTAAAAAGKASRAAATRTAAVSAGGSAAKPGKAGKSSTA
ADVSTPSRVAKQRVTPAASSAAKPGKPGKSSAAATGTASPRAAKRGAVSTASASSTPKSG
KRSVSSGSAASGKPAAPSKAASSKTARTPATSSARKTSTATAASSIRKARASASNAPDGV
AITHPERVVFPAAGISKGDVAAYYRAVAPLVLPEIARRPLSLLRCPDGAAGACFFQKHEG
RHLGAHIKAIPLKQKSGTEDYLYIEDVAGLLELVQMNTLELHPWGARVDDPEHPDRLVFD
LDPGEGVAWTQVVAAAREIRSKLRAAGLESAVRLSGGKGLHVVVPIVPQASWDQARDFCE
AFAQALATQAPERYVATMSKAKRHGVIFVDWLRNGRGNTSVCSWSLRAREHATVAVPLRW
EELGKLSGPDAFPLDKAVQRAKRQRNDPWADVLALKQVLPG
NT seq 3006 nt NT seq  +upstreamnt  +downstreamnt
atgtcgttgcgcgactacactcgcaagcgccgcttcgaccagaccccggagccggccgag
gacgccgcggcgacagcgcatcggcagccgatcttcgtggtgcaactgcatcacgccagc
tcgcgccattacgattttcgcctggaagccgatggcgtgctcaagagttgggcggtgccc
aagggcccgtcgctgcgtgctggcgaaaaacgcctggcggtgcaggtggaggatcacccg
cttgcgtacgcgggcttcgaaggcgacatcccgcaagggcagtacggggcggggcacgtg
caggtattcgaccacggcacctggcactgcgatggcgacgcgttggcggcgctggatgcc
ggcaagctggactttgacctgcagggcgacaagctgcgcggtggctttgcactggtacgc
acacgcttgcgtggacgccagccgcagtggttattgatcaagcgcgacgatgcccatgcc
gccgatctggacgccgatgcgttggtagccgattccgatgccacagcgcaggcgattgag
actccatcggctgcagccgcaccggcgcgccgtgccaaggccagccgtcgtcgacgcacg
ccggccgaggcgttggtgacagaaaaatccgcatccgccagccgcccgcgtgcttccgca
gccacacaggcccactggcgcacgcgcgcactggccttgccgggcgcgcgcgatgcggcc
tgccctaccggcttgcgcgcgcagctgacgttgctgcgcgctgaggcgccggatggtgcg
cagtggccgcacgagatcaagtgggacggctaccggttgttgaccgatctggtcgatggc
cgggcgcaactgcgctcgcgcaacgatcaggcctggacggacagctttccggaagttgcc
acggccgtgcaggcgttgccggtgcgcgatgcgcgcctggatggcgaactggtggtactc
gatgcgcaaggccgcagcgatttctccgcgctgcaacgtgccatcgacggcactgcgcgc
cagccgttgcgctacctggtgttcgatctgctcggcgttgctggcgtggatctgcgcgcc
accccactgctggagcgcaagcagttgttgcgtgcgttgctcggcgaaacgccgggcacg
ctggcctatagcgcgcatgtaatcggccgcggaccggaggtgtttgccgccagtgccgac
aaaggctgggaaggcatcgtcagcaaacgcgcggacgcgccgtaccgtggcgggcgcagc
gccgattgggtcaagaccaagcacgaagacagcgacgagttcgtggtggtgggctacacc
gaccccaagggcgcgcgcagcggctttggcgccctgttgctggcacagctcgacggcacg
cagctgcgctacgtgggccgggttgggaccggtttcgatagtgcgctgctcggcgagatc
accgcgcaattgcaggcattgcacagcccgcagcccacgctggaattacccgcgcacata
cccagccggccgcgcgatgtgcactgggtgcgcccggtgttgatcgccgaggtggcgttc
cgtggctgggccaagcagggcctgctgcggcaggcggccttcaagcgtttacgcgaggac
aaaccaatgagcgatctgggcggcgaccgcgccacaccgggcaagtcgcggggagcacgc
acgcggacggctgcagctgctgcgggcaaggcatcacgtgctgcagcgacgcgcactgcg
gcggtatcggctggcggttcggctgcgaagccgggcaaggcgggcaagtcgtccactgca
gcggatgtcagcacaccgtcgcgtgtcgccaaacaacgtgtgacaccggccgccagttcc
gctgccaagccaggaaagccgggcaagtcgtccgcagcggccacgggcactgcctcgccg
cgtgcggccaaacgaggtgcggtgtctaccgccagcgcatcgtctactccgaagtcgggc
aagcgcagcgtttccagcgggtccgcagcgtccggcaagccggccgcgccgagcaaggcc
gcatcgtccaaaacggcacgcacaccagctacgtcatcggcaaggaaaacctcgacagca
acggcagcgtcatccatacggaaagcgagggcatcggcctccaacgcgccagacggcgtt
gccattacccatcctgagcgcgtggtgttccctgccgccggcatcagcaagggcgatgtg
gccgcgtattaccgcgcggtggcaccgctggtgttgccggagatcgcgcgccggccgttg
tcgttgttgcgctgccccgatggcgctgcaggtgcgtgctttttccagaagcacgaaggc
cgccatcttggcgcgcacatcaaggcgatcccgctgaagcagaagagcggcaccgaagat
tatctgtacatcgaggatgtggccgggctgctggaattggtgcagatgaacaccctggag
ctgcatccctggggcgcgcgggtggatgaccccgagcaccccgaccggctggtgttcgac
ctggatccgggcgaaggcgtggcctggacgcaggtggtagccgccgcacgcgagatccgc
agcaagttgcgtgcggccgggctcgaaagcgccgtgcgcctgtcgggtggcaagggactg
cacgtggtggtgccgatcgtgccgcaggccagctgggaccaggcacgcgatttctgcgaa
gccttcgcacaggccttggccactcaggccccggagcgctatgtggccaccatgagcaag
gccaagcgtcacggcgtgatctttgtcgactggctgcgcaacgggcgcggcaataccagc
gtgtgctcgtggtcgctacgcgcgcgcgagcacgccaccgtggcggtgccgctacgctgg
gaagaactgggcaaactcagcggcccggatgcattcccgctggacaaggccgtgcagcgc
gcaaagcgtcagcgcaatgatccctgggcggatgtgctggcgttgaagcaggtgttgcct
ggctag

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