KEGG   Xanthomonas campestris pv. campestris 8004: XC_1808Help
Entry
XC_1808           CDS       T00247                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
xcb  Xanthomonas campestris pv. campestris 8004
Pathway
xcb03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:xcb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    XC_1808
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xcb03400]
    XC_1808
Enzymes [BR:xcb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     XC_1808
DNA repair and recombination proteins [BR:xcb03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     XC_1808
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: AAY48871
UniProt: A0A0H2X6P6
LinkDB All DBs
Position
2195931..2198480
Genome map
AA seq 849 aa AA seqDB search
MSLSEYRRKRSFDKTREPEPGKLLPQGQRAIFVVQLHHASRRHYDFRLQVGDALKSWAVP
KGPSYDPAVKRMAVEVEDHPVDYASFEGEIPKGEYGGGHVAQFDHGVWATAGDPEAQLAK
GHLRFELFGSKLKGGWHLVRSSKPARQPQWLLFKEDDAYAGTLEADDLLADVAAAPAEDV
RRAGAGKAQRKALTTVPVPRARARNAWTNAALKLTHARRGDIDDAAFAPQLAKLGQAPPE
GAQWVHEIKWDGYRILATVTDGQVRLWSRNALEWTDKIPDIRDAIQALNLRSARLDGELI
AGRGTKEDFNLLQATLSGERQVPLALAVFDLLHIDGVEISEAPLRERKQLLQQILANAPA
GHLAYSSHVEGDGLEAFRVAGEQHFEGIISKRADRPYRGGRSDDWRKTKQLASQEYAVVG
YTAPKGSRTGFGSLLLATPDPQHGWLYVGRVGSGFSDTLMQEVTQHLHGGGKRPTAHIPT
EDTDLRGATWFAPRFVVEVFYRGIGGQQLLRQASLKAVRLDKDIADLADSDMGDVSPAQA
DVADTPARGRKRANKQAPAQGEPTLSSPTKLIYPDIRATKGDVWDYYHAVMDHLLPEIVG
RPLSIIRCPNGAEKPCFFQKHHTAGLERVSSVRLKEETGSNAYYLVVEDAPGLLELVQFN
ALEFHPWGSHAARPDMADRVVFDLDPGPDVPFAEVKRAATDIRKLLAQLELESFLRVSGG
KGLHVVVPLNPGCDWELTKRFAKGFADALAQSEPDRFVATATKRFRNKRIFVDYLRNGRG
ATAVASYSLRGRPGAPVALPLPWSDLAKLHRANAFTLRDVPDKLRRRRKDPWADIAQIQQ
NLARWADQG
NT seq 2550 nt NT seq  +upstreamnt  +downstreamnt
atgagcctgagtgaataccgccgcaagcgcagcttcgacaagacccgcgagccggagcca
ggcaagttgctgccgcaagggcagcgggcgatcttcgtggtgcagctgcaccatgccagc
cggcgccactacgatttccgcttgcaggtgggcgatgcgctcaagagctgggcggtgccg
aaggggccaagctacgacccggcagtcaagcgcatggcggtagaggtggaagaccacccg
gtggactatgccagtttcgaaggcgagattccgaagggcgaatacggcggcggccacgtg
gctcagttcgatcatggggtctgggccaccgccggtgacccggaagcgcagttggccaag
ggccacctgcgcttcgagttgttcggcagcaagctcaagggcggctggcacctggtgcgc
tcgagcaagccggcccgccagccgcagtggttgctgttcaaggaggacgacgcctatgcc
ggcacgctggaagccgacgatctgctggccgatgtggctgcggcgccagcagaagatgta
cgtcgcgccggtgccggcaaggcccaacgcaaggcactcaccaccgtgcctgtgccccgg
gcgcgcgcacgtaacgcctggaccaacgccgcgttgaaactcacgcacgcgcggcgcggc
gacatcgacgatgccgcgttcgcaccgcagctggccaagctcgggcaggcgccgccggaa
ggggcgcaatgggtgcatgaaatcaagtgggacggttatcgcatcctggccacggtgacc
gatggtcaggtacggctgtggtcgcgcaatgcgctggaatggaccgacaagattcccgat
atccgcgatgcgatccaggcgctcaacctgcgctcggcacggctggatggcgagctgatc
gccgggcgtggcaccaaggaggatttcaacctgctgcaggcgaccttgtcgggcgaacgc
caggtgccgctggcgctggcggtgttcgacctgctgcacatcgatggcgtggagatcagc
gaggcgccgctgcgcgaacgcaagcagctcttgcagcagatcctggcgaatgcgccggcc
ggccatctggcctacagctcgcatgtggagggcgatgggctggaggcgttccgggtcgcc
ggcgagcagcacttcgaaggcatcatttccaagcgtgccgaccggccgtaccgcggcggt
cgcagcgatgattggcgcaagaccaagcaactggccagccaggaatacgcggtcgtcggc
tataccgcgcccaagggcagccgtaccggcttcggctcgctgctgctggccacgccggac
ccgcagcacggctggttgtatgtggggcgggttggttcgggcttttctgatacgttgatg
caggaggtgacccagcacctgcacgggggcggcaagcggcccaccgcgcatatccccacc
gaggacaccgatctgcgtggcgccacctggttcgcgccgcggttcgtggtggaggtgttc
tatcgcggcatcggggggcagcagctgttgcgccaggcctcgctcaaggcggtgcgtctg
gacaaggacatcgccgacctggccgacagcgatatgggggatgtcagtcccgcgcaggcc
gacgtggccgacactccagcacgcgggcgcaagcgtgcaaacaagcaagcgcccgcgcag
ggcgagcccacgttgtccagcccgaccaagctgatctacccggacatccgcgccaccaag
ggcgatgtctgggactactaccacgcggtgatggatcacctgctgccagagatcgtgggg
cggccgttgtcgatcatccgttgccccaatggcgcggaaaagccgtgtttcttccagaag
catcacaccgccgggctggagcgggtgagctcggtgcggttgaaggaagagaccggcagc
aatgcctactatctggtggtcgaagatgcgcccgggctgctggaactggtgcagttcaat
gcgctggaattccacccctggggctcgcatgccgcgcggccggacatggccgatcgcgtg
gtgttcgatctggatccgggcccggatgtgccatttgccgaggtcaaacgggccgccacc
gatatccgcaagctgctggcgcagctggagctggaatcgtttctgcgcgtctccggtggc
aagggcctgcacgtggtggtgcccttgaatccgggctgcgattgggagttgaccaagcgc
tttgccaaaggctttgccgacgcattggcgcaatccgagccggaccgctttgtggcgacg
gcaaccaagcgcttccgcaacaaacgcatctttgtcgattatctgcgcaacgggcgtggg
gccaccgcagtggcgtcgtactcgctgcgcggccgcccgggcgcaccggtggcattgccg
ctgccgtggtcagatttggccaagctacatcgcgccaacgccttcaccctgcgcgatgtc
ccagacaagttgcgtcgccgccgcaaggacccttgggcagacatcgcgcagattcaacag
aacctggcgcgctgggcggaccagggctga

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