KEGG   Xanthomonas campestris pv. campestris ATCC 33913: XCC1290Help
Entry
XCC1290           CDS       T00083                                 

Gene name
lig2
Definition
(RefSeq) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
xcc  Xanthomonas campestris pv. campestris ATCC 33913
Pathway
xcc03030  DNA replication
xcc03410  Base excision repair
xcc03420  Nucleotide excision repair
xcc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:xcc00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    XCC1290 (lig2)
   03410 Base excision repair
    XCC1290 (lig2)
   03420 Nucleotide excision repair
    XCC1290 (lig2)
   03430 Mismatch repair
    XCC1290 (lig2)
Enzymes [BR:xcc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     XCC1290 (lig2)
    6.5.1.6  DNA ligase (ATP or NAD+)
     XCC1290 (lig2)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     XCC1290 (lig2)
DNA replication proteins [BR:xcc03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    XCC1290 (lig2)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     XCC1290 (lig2)
DNA repair and recombination proteins [BR:xcc03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     XCC1290 (lig2)
   NER (nucleotide excision repair)
    Other NER factors
     XCC1290 (lig2)
   MMR (mismatch exicision repair)
    Other MMR factors
     XCC1290 (lig2)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID: 1001693
NCBI-ProteinID: NP_636664
UniProt: Q8PB36
LinkDB All DBs
Position
complement(1507897..1509501)
Genome map
AA seq 534 aa AA seqDB search
MKRFAALYRTLDRSTGTLDKRAALVAYFRAAPPLDAAWALYLLAGGKVASARMRIAASGE
LREWIAEAAGIADWLVADSYDHVGDLAETLALLLDDPASEAVDVSLAEWIEQRLLPIANQ
DVAVRKHCIVQAWRTLAFDERLVFNKLLTGALRVGVSQRLVQQALAELSGVDIARIAQRM
LGSWRPHATYVADLLTHEALPGDRQQPYPFFLASPLEADVESLGAIDDWLLEWKWDGIRL
QLLRRAGEAALWSRGEERLDGRFPEIEQAAMGLPDGTVIDGELLAWQPEQLLPMPFTALQ
TRIQRLKPGPKTLAAAPARVVAYDLLELDGEDLRERPLHARRALLERVLATLADPRIIAS
PLVHSTDWQAAAQVRLDARARGVEGLMLKRARSPYQSGRRRGDWWKWKIDPLTIDAVLLY
AQAGHGRRSTLYTDYTFGLWHDGALVPIAKAYSGLDDTEILQLDRWIRANTTERFGPVRA
VTPHHVFELGFEGVNRSTRHKSGIAVRFPRILRWRHDKPFAEADHLSSLQALAR
NT seq 1605 nt NT seq  +upstreamnt  +downstreamnt
gtgaagcggtttgcggcgctgtaccgcaccctggaccgcagcaccggcacgctcgacaag
cgcgccgccttggtggcgtatttccgcgcagcgccgccgctggatgcggcctgggcgctg
tatctgttggcgggtggcaaggtggccagtgcgcgcatgcgcatcgccgccagcggcgag
ttgcgcgagtggatcgccgaggccgccgggatcgccgactggctggtagccgacagctac
gatcacgtgggcgatctggccgaaacactggcattgctgctggatgatccagccagcgag
gcggtggatgtgtcactggccgagtggattgaacaacgcctgctgccgatcgccaatcaa
gacgtggcggtgcgcaagcactgcatcgtgcaggcgtggcgcacgctggccttcgacgaa
cgcctggtcttcaacaagttgctgaccggcgccctgcgcgtgggtgtgtcgcaacggttg
gtgcagcaggcgctggcagaactgtcgggcgtggatatcgcacgcattgcccagcgcatg
ctcggcagctggcgcccgcatgccacgtatgtggccgacctgctcacgcatgaggcgctg
cccggcgaccgccagcagccctacccgttttttctggcatcgccgctggaggccgatgtc
gagagcctgggcgccatcgacgactggctgctggaatggaagtgggatggcatccggctg
cagctgttgcgtcgtgcgggtgaagcggcgctgtggtcgcgtggcgaagaacgcctggat
ggccgctttccagagatcgagcaggctgccatgggcttgccagacggcaccgtgatcgac
ggcgagctgctggcctggcaaccagagcaactgttgccgatgccgttcaccgcgctgcag
acgcgtatccagcggctcaagcccgggcccaagacgctggcggcggcgccagcgcgcgtg
gtcgcctacgacctgctcgaactggacggcgaagacctgcgcgagcgcccgctgcacgca
cgccgcgcactactggagcgcgtgctcgccaccctcgccgacccacgcatcatcgcctcg
ccgctggtgcactccaccgattggcaggccgccgcgcaagtgcgattggatgcacgtgcg
cgcggcgttgaagggctgatgctcaagcgcgcgcgttcgccctaccaatccggccgccgc
cgtggcgactggtggaagtggaagatcgacccactgaccatcgatgcggtgttgctgtac
gcacaggccggccatggccggcgcagcacgctgtacaccgactacaccttcgggctctgg
cacgacggcgcgctggtgcccatcgccaaggcgtattcgggcctggacgataccgagatc
ctgcaactggatcgctggatccgcgccaacaccaccgagcgcttcgggccggtgcgcgcg
gtcacgccgcaccatgtgttcgaactgggctttgaaggcgtgaatcgcagcacgcggcac
aagtccggcattgcggtgcgcttcccgcgcatcctgcgctggcgccatgacaaacccttc
gccgaggccgaccacctgagcagcctgcaggcactggcgcggtga

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