KEGG   PATHWAY: xco04120
Entry
xco04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Xiphophorus couchianus (Monterrey platyfish)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
xco04120  Ubiquitin mediated proteolysis
xco04120

Other DBs
GO: 0016567
Organism
Xiphophorus couchianus (Monterrey platyfish) [GN:xco]
Gene
114150720  uba52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
114141969  LOW QUALITY PROTEIN: ubiquitin-40S ribosomal protein S27a-like [KO:K02977]
114138068  ubiquitin-40S ribosomal protein S27a [KO:K02977]
114134995  ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
114150168  uba1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
114133524  sae1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
114152676  uba2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
114136204  NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
114148852  NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
114144199  uba6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
114148726  ubiquitin-conjugating enzyme E2 A-like [KO:K10573] [EC:2.3.2.23]
114139126  ube2a; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
114153152  ube2b; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
114135292  ube2c; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
114154558  ubiquitin-conjugating enzyme E2 D4 isoform X1 [KO:K06689] [EC:2.3.2.23]
114139465  ubiquitin-conjugating enzyme E2 2-like [KO:K06689] [EC:2.3.2.23]
114139358  ube2d2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
114138579  ubiquitin-conjugating enzyme E2 D2-like [KO:K06689] [EC:2.3.2.23]
114134621  ubiquitin-conjugating enzyme E2 D2-like isoform X1 [KO:K06689] [EC:2.3.2.23]
114156669  ubiquitin-conjugating enzyme E2 E2-like [KO:K20217] [EC:2.3.2.23]
114156671  ubiquitin-conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
114142289  ubiquitin-conjugating enzyme E2 E1-like [KO:K20217] [EC:2.3.2.23]
114142122  ubiquitin-conjugating enzyme E2 E2 [KO:K20217] [EC:2.3.2.23]
114148651  ube2f; NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
114154942  ubiquitin-conjugating enzyme E2 G1-like [KO:K10575] [EC:2.3.2.23]
114153438  ube2g1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
114148776  ube2g2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
114160818  ube2h; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
114159799  ubiquitin-conjugating enzyme E2 H-like [KO:K10576] [EC:2.3.2.23]
114157848  ube2i; SUMO-conjugating enzyme UBC9 [KO:K10577]
114159801  SUMO-conjugating enzyme UBC9-like [KO:K10577]
114158463  ube2j1; ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
114134947  ube2j2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
114144410  ube2k; ubiquitin-conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
114139408  ubiquitin-conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
114155178  ube2l3; ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
114149384  ubiquitin-conjugating enzyme E2 L3-like isoform X1 [KO:K04552] [EC:2.3.2.23]
114160054  ube2m; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
114161189  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
114133410  ube2n; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
114145402  ube2o; (E3-independent) E2 ubiquitin-conjugating enzyme isoform X1 [KO:K10581] [EC:2.3.2.24]
114142863  ubiquitin-conjugating enzyme E2 Q2-like [KO:K10582] [EC:2.3.2.23]
114156345  ube2ql1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
114136969  ubiquitin-conjugating enzyme E2 Q2-like isoform X1 [KO:K10582] [EC:2.3.2.23]
114151081  ubiquitin-conjugating enzyme E2 R2-like [KO:K02207] [EC:2.3.2.23]
114146949  ubiquitin-conjugating enzyme E2 R1-like [KO:K02207] [EC:2.3.2.23]
114135261  ube2r2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
114142337  ube2s; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
114136823  ube2w; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
114147972  ube2z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
114138326  birc6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
114140745  ubiquitin-protein ligase E3A [KO:K10587] [EC:2.3.2.26]
114151271  ubiquitin-protein ligase E3A-like [KO:K10587] [EC:2.3.2.26]
114154853  ube3b; ubiquitin-protein ligase E3B isoform X1 [KO:K10588] [EC:2.3.2.26]
114137091  ube3c; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
114159764  smurf1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
114159826  E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
114144713  E3 ubiquitin-protein ligase SMURF2-like isoform X1 [KO:K04678] [EC:2.3.2.26]
114134640  itch; E3 ubiquitin-protein ligase Itchy homolog [KO:K05632] [EC:2.3.2.26]
114135506  E3 ubiquitin-protein ligase Itchy-like isoform X1 [KO:K05632] [EC:2.3.2.26]
114136982  wwp1; NEDD4-like E3 ubiquitin-protein ligase WWP1 [KO:K05633] [EC:2.3.2.26]
114151070  wwp2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
114161892  trip12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
114142670  nedd4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
114149514  nedd4l; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
114147595  huwe1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
114143892  ubr5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
114143660  herc1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
114149311  probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
114150537  E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
114152875  LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC4 [KO:K10614] [EC:2.3.2.26]
114145633  herc3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
114138457  herc4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
114133382  ube4a; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
114143192  ube4b; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
114159387  stub1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
114154138  ppil2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
114139521  prpf19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
114154431  ubox5; RING finger protein 37 isoform X1 [KO:K10600]
114160947  mdm2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
114153038  E3 ubiquitin-protein ligase CBL-like [KO:K04707] [EC:2.3.2.27]
114133667  cbl; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
114139967  cblc; E3 ubiquitin-protein ligase CBL-C isoform X1 [KO:K22518] [EC:2.3.2.27]
114137879  E3 ubiquitin-protein ligase parkin-like [KO:K04556] [EC:2.3.2.31]
114137605  E3 ubiquitin-protein ligase parkin-like [KO:K04556] [EC:2.3.2.31]
114161206  siah1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
114142760  traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
114147064  cop1; E3 ubiquitin-protein ligase COP1 [KO:K10143] [EC:2.3.2.27]
114155033  rchy1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
114153415  birc2; baculoviral IAP repeat-containing protein 2 isoform X1 [KO:K16060]
114139667  E3 ubiquitin-protein ligase XIAP-like [KO:K04725] [EC:2.3.2.27]
114149363  baculoviral IAP repeat-containing protein 7-like [KO:K16061]
114160944  pias1; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
114143278  E3 SUMO-protein ligase PIAS1-like [KO:K04706] [EC:2.3.2.-]
114155171  E3 SUMO-protein ligase PIAS2-like isoform X1 [KO:K16063] [EC:2.3.2.-]
114151107  pias4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
114139240  syvn1; E3 ubiquitin-protein ligase synoviolin isoform X1 [KO:K10601] [EC:2.3.2.27]
114139258  nhlrc1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
114147062  aire; autoimmune regulator [KO:K10603]
114160056  mgrn1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
114151962  brca1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
114138261  fancl; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
114148002  E3 ubiquitin-protein ligase Midline-1-like isoform X1 [KO:K08285] [EC:2.3.2.27]
114141125  E3 ubiquitin-protein ligase Midline-1-like [KO:K08285] [EC:2.3.2.27]
114149294  trim32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
114153129  trim37; E3 ubiquitin-protein ligase TRIM37 [KO:K10608] [EC:2.3.2.27]
114160562  rbx1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
114136425  cul1; cullin-1 [KO:K03347]
114152468  skp1; S-phase kinase-associated protein 1 [KO:K03094]
114138794  F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
114150144  skp2; S-phase kinase-associated protein 2 [KO:K03875]
114144352  fbxw7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
114156901  F-box/WD repeat-containing protein 7-like [KO:K10260]
114135531  F-box only protein 2-like isoform X1 [KO:K10099]
114154826  fbxo4; F-box only protein 4 [KO:K10291]
114136817  cul2; cullin-2 [KO:K03870]
114136824  eloc; elongin-C [KO:K03872]
114156971  elob; elongin-B [KO:K03873]
114160122  elongin-B-like [KO:K03873]
114135786  vhl; von Hippel-Lindau disease tumor suppressor [KO:K03871]
114146168  cullin-3-like [KO:K03869]
114133189  cullin-3 [KO:K03869]
114144048  keap1; kelch-like ECH-associated protein 1 [KO:K10456]
114134410  kelch-like ECH-associated protein 1 [KO:K10456]
114153205  klhl13; kelch-like protein 13 isoform X1 [KO:K10447]
114148636  kelch-like protein 9 [KO:K10447]
114154600  rhobtb2; rho-related BTB domain-containing protein 2 isoform X1 [KO:K07868]
114154544  rho-related BTB domain-containing protein 2-like isoform X1 [KO:K07868]
114143365  cul4a; cullin-4A [KO:K10609]
114139079  cul4b; cullin-4B [KO:K10609]
114142998  ddb1; DNA damage-binding protein 1 [KO:K10610]
114134296  ddb2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
114154208  ercc8; DNA excision repair protein ERCC-8 [KO:K10570]
114151830  det1; DET1 homolog [KO:K10571]
114133575  rnf7; RING-box protein 2 [KO:K10611]
114153453  cul5; cullin-5 isoform X1 [KO:K10612]
114133341  cullin-5 isoform X1 [KO:K10612]
114160455  socs1; suppressor of cytokine signaling 1 [KO:K04694]
114145515  suppressor of cytokine signaling 1-like [KO:K04694]
114160153  suppressor of cytokine signaling 3-like [KO:K04696]
114152393  suppressor of cytokine signaling 3-like [KO:K04696]
114154962  fbxw8; F-box/WD repeat-containing protein 8 [KO:K10264]
114144000  anapc11; anaphase-promoting complex subunit 11 [KO:K03358]
114159987  anapc2; anaphase-promoting complex subunit 2 [KO:K03349]
114145793  cdc20; cell division cycle protein 20 homolog [KO:K03363]
114146456  fizzy-related protein homolog isoform X1 [KO:K03364]
114147111  fzr1; fizzy-related protein homolog [KO:K03364]
114138257  anapc1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
114160217  cdc27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
114150492  anapc4; anaphase-promoting complex subunit 4 [KO:K03351]
114154943  anapc5; anaphase-promoting complex subunit 5 [KO:K03352]
114148835  cdc16; cell division cycle protein 16 homolog [KO:K03353]
114154871  anapc7; anaphase-promoting complex subunit 7 [KO:K03354]
114153492  cdc23; cell division cycle protein 23 homolog isoform X1 [KO:K03355]
114156986  anapc10; anaphase-promoting complex subunit 10 isoform X1 [KO:K03357]
114136975  cdc26; anaphase-promoting complex subunit CDC26 [KO:K03359]
114137548  anapc13; anaphase-promoting complex subunit 13 isoform X1 [KO:K12456]
114162013  anapc15; anaphase-promoting complex subunit 15 [KO:K25228]
114151974  anapc16; anaphase-promoting complex subunit 16 [KO:K25229]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
xco03050  Proteasome
KO pathway
ko04120   
LinkDB

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