Xiphophorus couchianus (Monterrey platyfish): 114134418
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Entry
114134418 CDS
T05908
Symbol
hif1a
Name
(RefSeq) hypoxia-inducible factor 1-alpha
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04137
Mitophagy - animal
xco04140
Autophagy - animal
xco04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
114134418 (hif1a)
04137 Mitophagy - animal
114134418 (hif1a)
04148 Efferocytosis
114134418 (hif1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xco03000
]
114134418 (hif1a)
Transcription factors [BR:
xco03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
114134418 (hif1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAS_3
PAS_11
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
PAS_2
WASH-7_C
Motif
Other DBs
NCBI-GeneID:
114134418
NCBI-ProteinID:
XP_027856846
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Position
19:19078811..19106668
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AA seq
757 aa
AA seq
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MDTAIIPEKKRVSSERRKEKSRDAARCRRGKESEVFYELAKQLPIPHSTSSNLDKASVMR
LTISYLRMQNLLCIDEPVAEETTELDIQLSGSYLKALDGFLVVLSEDGDMIYISENVNKC
LGLAQFDLIGHSVFDFTHPCDQEELREMLVYRSGSKKVKEPSTERSFFLRMKCTLTSRGR
TVNVKSATWKVLHCSGHVHVHSSEQSADGHKEPPVPYLVLICDPIPHPSNIEVPLDTKTF
LSRHTMDMKFTYCDERITELMGYDPEDLLDRSVYEYYHALDSDYLTKTHHHLFAKGQVTT
GQYRMLAKRGGFVWVETQATVIYNNKNSQPQCVVCVNFVLSGIQEEKLILSLEQTQEMKP
VKKEEEQQQDEVKAEVKKSEAVRADNEEEEETPEQKLHLNFQDLVIKKQEQDCLYNLLKG
HPDALMLLAPAAGGTIISLDFSRPGSESEIHLVKDIPLYNDVMLPSSGDKLPLPLSPLAP
TEPLEPASSSAEEAKPDSFAPALSSKPPNKPSEVDNTLGFSFPMDTEINSDFKLDLVEKL
FAIDPEPKTPFNTEGMEDSELEMFAPYISMDDDFQLPCLGPDESLSCGPVKALESCPVLV
TLDVHSHPSSPFSAPESRPASPAPPEPVGTPPPATVAANRVAQPEKEVPLRNLAAQNIQR
KRKLSELKEIIEQGSLTQEQPEKGKKLKATEQGATRTILLLPSDLASRLLGTTSDGGGSL
VSLPQLTSYDCEVNAPLQGRQYLLQGEELLRALDHVI
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atggacacagcgatcatacctgaaaagaaaagggtgagttcggagcgcaggaaggagaaa
tcgagggacgcggcgcgatgccgtcgcgggaaggagtcggaggttttctacgagttggcc
aagcagctgcccatcccccacagcaccagctccaacctggacaaggcctccgtcatgagg
ctgaccatcagctacctgcgcatgcagaatctgctctgcatcgatgagccagtggcagag
gagacgacagaactggacatccagctaagcggctcctacctgaaggccttagacggcttc
ctggtggttctgtctgaagacggagatatgatctacatctcagaaaacgtcaacaagtgc
ctcggcctggcacagtttgacctgattggacacagcgtgtttgacttcacgcatccctgc
gaccaggaggagctgagagagatgctggtctacagaagcggctccaagaaagtcaaggaa
ccgagtacagagcgcagcttctttctgcggatgaaatgcacactgacgagccggggccgc
accgtcaacgtaaagtccgccacatggaaggtgctgcattgttcgggtcacgttcacgtt
cacagcagcgagcagagcgccgacggccacaaggagccgccggtcccatacctggttctg
atctgcgacccgatccctcacccctccaacatcgaggttcctctggataccaagaccttc
ctcagccgccacacgatggacatgaagttcacatactgtgacgagaggatcactgagctc
atgggttacgatccagaggacctgctggaccgttctgtgtacgagtactaccacgctctg
gactcagactatctcacaaagactcaccatcacttgtttgcgaagggccaggtcaccaca
ggtcagtaccggatgctggcgaaaagaggcggctttgtgtgggtcgaaactcaggccact
gtcatctacaacaacaagaactcgcagcctcagtgcgtcgtctgcgtcaactttgtgctc
agcgggatccaggaggagaaactgatcctttctttggagcagacacaggagatgaagccg
gtgaagaaagaggaggagcagcagcaggatgaagtcaaggctgaagtgaagaagagcgaa
gccgtccgagcggacaatgaggaagaggaggagaccccggagcagaagctgcacctaaac
ttccaggatctggtgattaagaagcaagagcaggattgtctttacaacctgctgaagggg
catccagacgccctgatgctgctggcgccggcagccggaggcaccatcatctccctggac
ttcagccgccctggctcagagtcagagattcacctggtgaaggacattcctctctacaac
gacgtgatgctgccctcctcaggcgacaagctgccgctgcctctgtctcctctggcgccc
accgagccgctggagcccgccagcagctccgctgaggaggcaaaacctgacagctttgct
ccagctctgtcctctaaaccccccaacaaaccctcagaagttgacaatactctgggcttc
tctttccccatggacacagaaattaactctgactttaaactggacctggtggaaaagctg
tttgccatcgacccagagcccaaaactcccttcaatacggaggggatggaggactctgag
ctggagatgtttgctccgtacatctccatggatgacgacttccagctgccctgcctcggc
cctgacgagtctctgtcttgtggaccagtcaaagccctggagagctgcccggtcctcgtc
acgctggacgtccacagccatcccagctctccgttcagcgcgccggagagtcgcccggct
tctccggctccaccggaacccgtcggcacgccccctcctgccaccgtggcggcaaacagg
gtcgcacagccggagaaagaggttcctctcagaaacctggctgctcagaacatccagcgg
aaaagaaagctgagcgaactgaaggagatcattgaacagggatctttgacccaagagcag
cctgagaagggcaaaaagctgaaggcgacggagcagggagcaaccaggaccattcttctt
ctgccttcagatctggccagccgactgctgggcaccacctcggacggcggcggctcactc
gtctcgctgccgcagctcaccagctacgactgcgaggtgaacgcccccttgcagggccgc
cagtacctgctgcagggggaggagcttctgcgcgctctggaccacgtcatctga
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