Xiphophorus couchianus (Monterrey platyfish): 114148002
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Entry
114148002 CDS
T05908
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1-like isoform X1
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
114148002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xco04121
]
114148002
Enzymes [BR:
xco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
114148002
Ubiquitin system [BR:
xco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
114148002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
zf-B_box
fn3
zf-RING_UBOX
PRY
zf-C3HC4_4
zf-C3HC4
zf-RING_2
zf-C3HC4_3
zf-RING_5
zf-C3HC4_2
Pur_ac_phosph_N
Inhibitor_Mig-6
Syntaxin_2
Motif
Other DBs
NCBI-GeneID:
114148002
NCBI-ProteinID:
XP_027878679
LinkDB
All DBs
Position
7:14525640..14569166
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AA seq
689 aa
AA seq
DB search
METLESELTCPICLELFEDPLLLPCAHSLCFNCAHRILVSHCTPSELIQSISAFQCPTCR
YVITLNQRGLEGLKRNVTLQNIIDRYQKASLSGPNSPSETRRERVIPEGKAMTSPTDRVQ
CQFCEQDPPQDAVKTCVTCEVSYCEECLKATHPNKKPFTGHRLIEPLQDSHLRGLMCLEH
EDEKVNMYCVTDEQLICALCKLVGRHRDHQVAALSDRYDKLKKFPGRLLCAGNDQSYQEA
DQQALDSNLSSLIKRTGELESLMGKLIQTCQNVEVNASRQENKLQEECDLLINIIQHRRQ
IIATKIKEGKAMRLRKLSQQIAGCKQCVERSSSLITQADQTLKESDHARFLQTAKSICER
VSMATASSQILLPEINLNDAFDTFALDFTREKKMLESLDYLTAPNPPSIREELCTASYDT
ITVHWTSDDEFSVISYELQYAIFTSQSNVVSLCNSVDSWMIAPNIKQNQYTVHGLQCGTN
YIFIVKAINQAGSRSSTPGKLKTNSQPFKLDPKSAHRKLRVSHDNLTVERDETSSKKSHS
QERFSSHSSYGVTGNVYIDSGRHYWEALIGGSTWFAVGIAYKSAPRHEWVGKNSASWVLS
RCNNSWVVRHNSKEIPIEPSPHLRRLGILLDYDSGSLSFYDAVASQHLYTFDIDFVHPVC
PVFNVWNRCLTVLSGLPIPDHLESTDFNH
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggaaacactagagtctgagctgacctgcccaatctgtctggagctttttgaggaccca
ctgctgctgccctgtgctcacagtctttgtttcaactgtgcccatcgtatcttggtctcc
cattgcacccccagcgagcttatccagtctattagcgccttccagtgtccaacttgtcgc
tatgtcattactctcaaccagagaggcctagagggactcaaacgcaacgtgaccctacag
aacatcatcgaccgctaccagaaagcctctttaagtggacccaactcccctagtgagact
cgtcgtgagcgagtgatcccagaaggcaaagccatgacatctcctacggaccgagtgcag
tgtcagttctgcgagcaggacccccctcaggatgcagtgaagacctgtgttacctgtgag
gtatcgtactgcgaggaatgcctcaaggccacccacccaaacaagaaacccttcacgggc
caccggctgattgaacccttgcaggactcccatctccggggactcatgtgtctggagcac
gaggacgagaaagtcaacatgtactgtgtaacagacgaacagttgatctgtgccttgtgc
aaacttgtcggccgacatcgagaccaccaagtggcggcccttagcgaccgatatgacaaa
ctcaagaagtttcctggccgccttctctgtgcggggaatgatcagtcataccaggaggcg
gaccagcaagcattggactccaacctcagcagcttaatcaaaaggaccggtgaattagaa
agtttgatggggaaacttatccaaacctgccagaatgtggaggtaaatgcctcgcggcaa
gaaaacaagctacaggaggagtgtgacctgctgattaatatcatacagcatcgaagacaa
ataatagcaacaaagataaaggagggaaaggccatgaggctgaggaagctctctcaacag
atagcgggctgtaaacagtgcgtcgagagatcgtcctccctcatcactcaggctgaccaa
acccttaaggagagcgaccacgcccgcttccttcagacagctaaaagtatctgtgagaga
gtctctatggcaacagcatcctctcagatactgttaccagaaattaacctgaacgatgca
tttgatacttttgctctggacttcacgagagaaaagaaaatgctagaaagtttggattac
ctcacagcaccaaatccaccgtcaattcgtgaggaactgtgtacagcttcgtacgacacc
atcacggttcactggacatcagacgatgagttttctgttatttcatatgagcttcagtat
gccatcttcaccagccagtctaatgttgtcagtctgtgtaactctgttgatagttggatg
attgccccaaacattaagcaaaatcaatacaccgtgcatggactccaatgtggcaccaac
tacattttcatagtgaaggccataaaccaggctggaagccgcagtagcaccccggggaaa
ctcaaaaccaacagtcagccattcaaattggacccaaagtctgctcatcggaagctaagg
gtatctcacgataaccttacggtggagagagatgagacatcatctaaaaagagccacagt
caggagcgcttctccagtcacagcagctatggggttactgggaatgtctacatagacagc
ggccgccattactgggaagctctgattggaggaagcacatggtttgctgtggggattgct
tacaagtctgcaccaagacacgagtgggttggcaagaactcggcctcctgggtactctcc
cgctgcaacaactcgtgggtggtgcgccacaacagcaaggaaatccccatcgagccttcg
ccccacctgcggcgccttgggatattgttggattacgattcggggtcgctctccttctac
gatgctgtggcctcgcagcacttgtacacatttgacattgactttgttcatccagtctgc
ccggtgttcaatgtttggaatagatgtttgacggtcctcagtggactgcccatacccgat
catttggagagcacagactttaaccactga
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