Xiphophorus couchianus (Monterrey platyfish): 114148376
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Entry
114148376 CDS
T05908
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04510
Focal adhesion
xco04512
ECM-receptor interaction
xco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114148376 (col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114148376 (col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
114148376 (col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xco04147
]
114148376 (col4a1)
00536 Glycosaminoglycan binding proteins [BR:
xco00536
]
114148376 (col4a1)
Exosome [BR:
xco04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
114148376 (col4a1)
Glycosaminoglycan binding proteins [BR:
xco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114148376 (col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
114148376
NCBI-ProteinID:
XP_027879408
LinkDB
All DBs
Position
7:12860296..12902585
Genome browser
AA seq
1645 aa
AA seq
DB search
MLSPSGALPPLLLLLLLAALYCSLDLTRAEGCGASCGKCDCGGVKGAKGERGFPGLQGNM
GFPGMQGHEGPPGPMGPKGDLGAPGAPGLKGVRGPPGLPGFPGNPGLPGLNGNDGPPGAP
GIPGCNGTKGERGMDGINGFPGLQGPPGLPGLEGMKGDPGGVIGIIPLKGDRGVPGSPGR
PGPPGLFGPIGPPGPRGYPGFKGDSGPPGPPGEKGDRLAFVSEKGDKGERGLRGPPGPPG
PPEEVIGQTTVLVPGPRGEKGLKGDRGEKGFCLPHQKGIKGEQGPPGPRGKPGKDGEFGI
KGEKGSSGVPGFPGLSGDKGEKGPPGYAEGPPGPPGPPGLPGKSGEKGFPGPQGEAGPPG
RFIEGARGEPGKKGEPGEKGDRGRDGEPLAGPPGRPGPVGPPGPPGLAPDPEECNMEKGN
PGPPGSPGLSGEEGQKGDKGEACVSCDGQPGPPGPAGVKGEQGPPGAVGGKGEKGRSGLP
GEPGTPGSSGSPGLMGAPGAVGEPGDIFIAPGYKGEKGVSGRPGLQGQPGREGQPGRDGL
PGQPGLKGEPAKEGIKGERGPDGDPGLMGPPGERGPPGVPGFGRPGGPGEKGSQGQPGRP
GSPGQPGLKGEPGKGISTPGPPGQPGPRGASGFPGLQGDRGETGVQGLPGFPGVKGEQGP
PGIGFPGPAGVKGISGIPGAPGVPGEPGRPGQDGSTGKAGPPGQKGEPGRGLPGPKGAQG
HQGVTGFPGDKGGMGLPGIPGSEGHTGPPGPQGVKGDVGPPGPPGQIGQSGAPGKGLPGP
QGPQGPRGETGPHGREGIKGEKGHPGSPGLDMPGPQGDKGAAGFPGDPGTKGLPGLPGVP
GRDGLIGYQGSKGEMGVMGIPGTPGFPGPPGQPGSPGLRGDPGVTGPRGESGKEGEKGER
GEEGPPGPPGNLTQTDMEHMKGEKGDIGDPGDRGSAGERGHPGIRGEQGMAGKDGEPGSP
GQPGQKGDPGFPGDPGTMGPPGPKGGVGEMGIPGPLGPKGSKGDIGTAGHPGFRGTDGEK
GDPGLPGEPGIGVPGFPGDKGRTGEPGLPGYRGDKGEKGQEGMPGKPGLQGPKGDKGGAG
YPGQSGRPGEKGIPGLPGSAGEAGREGRPGEGGRQGPPGPRGDKGEPGQDGIPGSSGERG
DPGLPGLGVPGRPGALGERGEKGDPGLPGMPGQSGVPGIKGEKGSPGPQGQQGEPGERGL
PGISLEGPKGVQGATGPAGGTGTPGAPGPAGVPGREGQQGEKGDAGRPGYQGESGQKGDS
GSPGFPGPPGLPGINGQKGERGLPGVAGFPGTKGTLGDSGFKGGAGDRGFPGEKGNEGPP
GPPGPKIFIKGDTGPPGDQGFPGPQGPPGFPGQKGEQGVTGIQGPKGETGIHGFDGQSGA
KGEPGVPGPQGPRGYPGPPGPDGVQGQVGPPGPSSMDHGFLVTRHSQSVEVPLCPGGTSQ
IYDGYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSP
EPMPMNMAPITGDSIRPFISRCVVCEAPAMVIAVHSQTIRIPPCPQGWNSLWIGYSFVMH
TSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIETEDMFTKPV
PTTLKAGSLRTHISRCQVCMKRTFT
NT seq
4938 nt
NT seq
+upstream
nt +downstream
nt
atgctgtcaccgtccggcgcgctgccgccgctgctgctgctgctgctgctggcggctctc
tactgcagcttagacctgacgcgggctgagggttgtggagcttcatgtggaaaatgtgac
tgcggtggagtgaagggagccaagggtgagcgtggatttcctggccttcagggtaatatg
ggattcccaggaatgcaggggcatgagggccctcctgggccaatgggccccaagggagat
ttaggagcacctggagctccgggactaaaaggagtgcgaggtcctcctggtctgccaggg
tttccagggaacccagggctaccaggcctcaatggaaacgacggtccgccaggtgcgcct
ggaatcccaggatgcaatgggaccaaaggcgaaagaggaatggacggcattaatggtttt
ccaggacttcaagggccgcctggcctcccaggtctggaaggaatgaaaggagatcctggt
ggtgtgattgggattatcccccttaaaggagacagaggggttcctggctcacctggacga
cctgggccacctggactctttggaccaattggacctccgggacccagaggatacccagga
tttaaaggggattctggacctcccggccctccaggagagaaaggtgacaggttagccttt
gtgagtgaaaaaggagataagggtgaacgaggactcagaggcccacctgggccccctgga
ccacctgaagaagtgataggacagaccacagttcttgtaccgggaccacggggggagaaa
ggactgaagggtgacagaggcgagaaaggcttctgtctccctcatcagaaaggaatcaaa
ggtgaacaaggcccacctggaccaagaggtaaacctggtaaagatggagagtttgggata
aagggagaaaaaggttcctcaggagttcctggattccctggtttgtcgggtgataaagga
gaaaaaggaccaccgggttatgctgaaggtccacctggccctcctggcccacctggtctc
ccagggaaatcgggagaaaaaggttttcctggccctcagggagaggctggcccaccaggc
cgcttcatcgagggtgctcgtggagaacctgggaagaaaggagaaccgggtgagaaaggt
gacagaggcagagatggagaacctcttgctgggccaccgggaagaccagggcccgtcgga
cccccggggccaccaggattagcacctgaccctgaagagtgtaatatggagaaaggaaac
cctggtccacctggatctcctggattatcaggggaggagggacaaaaaggtgataaagga
gaagcttgtgttagttgtgatggccaacctggaccacctggccctgcaggcgttaaagga
gagcaaggaccaccaggcgcagttggaggtaaaggagaaaagggtcgctctggtctacct
ggagaacctggaacacctggttcttcaggatctcctggactgatgggggctcctggtgct
gtaggggaacctggagacattttcatagcacctggttataaaggggagaaaggtgtttct
ggacgtcctggattacagggacaacctggcagggaaggacagccagggagagacggactc
ccgggtcaaccgggcctcaaaggagaacctgccaaagaaggcattaaaggtgaacgtggc
ccagacggtgaccccggcctcatggggcctcctggagaaaggggcccccctggtgttcca
gggtttggccggccgggtggtccaggagagaaaggaagtcagggacagccaggccgtcca
ggaagtccaggacagcccggtctgaaaggagagccaggtaaaggtattagcactccggga
cccccggggcagcctggaccaaggggagctagtggcttccctggacttcaaggtgacaga
ggtgaaacaggtgtccaaggtctgccaggctttcctggagtaaagggagaacaaggacca
cctggaatcggctttcctggcccagcgggtgtcaaaggtatcagtggaatccctggagcc
ccaggagtccctggagagccagggagaccaggacaggacggctcaactggaaaagctggt
ccacctggacaaaagggtgagcctggacggggtcttccaggaccgaaaggtgcgcagggc
caccaaggagtcacaggctttcccggagataagggtggcatgggactcccaggtattccc
ggctcagaaggacacacaggtcctccgggacctcagggagttaaaggtgacgtcggacct
ccgggaccacccggtcagatcggccaatcgggtgctccggggaaaggcttgcctggacca
caaggacctcaaggaccacgtggagaaacgggacctcatgggagagaaggtataaaagga
gaaaagggccatcctggctctccaggcctcgatatgccgggacctcagggagacaaagga
gccgctggcttcccaggagaccccggtaccaaaggactgccgggtctgccaggcgtaccc
ggccgagacgggttaatagggtaccaaggttccaaaggtgaaatgggggttatgggaatt
ccaggaacgccgggattcccaggaccacccgggcaacctgggtcgcctggtctgagaggg
gatcctggtgttactggaccgagaggagagtctgggaaagaaggagagaaaggtgaaagg
ggagaggagggtccgccaggtcctccaggaaacctcactcaaactgacatggagcatatg
aaaggggaaaagggagacattggagacccaggtgaccgtggttctgccggagagaggggc
caccctggcattcgaggagaacagggaatggctggcaaagacggtgaacctggatcacct
ggccagccaggtcagaaaggagatcctggttttcctggagatcctggtaccatgggacct
ccagggccaaaaggcggcgtaggggagatgggaataccaggtccacttggtccaaaaggt
tccaaaggagacatcggtacagcgggtcatcctgggttcagaggtacagatggtgaaaaa
ggagacccgggactacctggcgagccgggtattggtgtccctggatttccaggagacaag
ggcaggacaggtgagccaggacttccaggataccgtggagacaagggtgagaagggtcag
gagggaatgcctggcaaacccggcctgcagggaccaaagggtgacaaaggaggcgctggg
tacccaggtcagtcaggcaggccaggcgagaagggcattcctggacttcctggatctgcc
ggagaggccggtcgtgaaggtcgccctggcgaaggtggccggcagggacctccgggtccc
cgcggagataagggtgagcctggacaggacggcatccctggatcctctggggagagagga
gacccaggtttgccaggtcttggtgtgcctggacgccctggagctctcggtgaaagaggt
gaaaaaggtgatccgggtcttcccggcatgcctggtcaatcaggtgtccctggtattaaa
ggagaaaagggttctcctggacctcagggacagcagggggagccaggagagcgaggtctt
cccggcatctcgctggaaggccccaaaggagttcagggagcaacaggacccgccggagga
acaggaacaccaggggcaccaggacctgctggagtgccaggcagagagggccaacagggc
gagaaaggtgatgcaggtcggcctggttatcagggagagtcggggcaaaagggcgactct
ggatctcctggatttcctgggccacccggcctcccaggcatcaacggccagaagggcgag
cgaggattaccgggagttgcaggcttcccaggcacaaaaggtactctgggtgactctgga
tttaaaggcggcgcgggtgacagaggcttccctggagaaaaaggtaatgaaggaccccct
ggtccacccggccccaagatcttcatcaaaggagacactggaccccctggagatcagggt
ttccctggacctcagggaccaccgggctttcctgggcagaaaggagagcaaggtgtgacg
ggtattcagggtccaaaaggtgaaaccggcatccatggatttgatggtcagtcaggcgcc
aaaggagaacctggtgtgccggggccacaaggacccagaggatatccaggtccaccggga
ccggacggtgttcaaggtcaagtgggtccgcctggcccgtcgtccatggaccatggtttc
ttagtaacacgccacagccaaagtgtggaggtgccactgtgccctggaggtacctctcaa
atatatgatggctactcgttgctctatgtgcaaggcaatgagcgctcccatggacaagac
ttaggtacggcaggcagttgcctccgaaagttcagccccatgccgttcttgttctgcaac
atcaacaacgtttgcaactttgcgtctcgtaacgattactcctactggctcacctcaccg
gagccaatgcccatgaacatggcgcccatcaccggggacagcatcaggcccttcatcagc
aggtgtgttgtatgtgaagctccggccatggtgatcgcagtccacagccagacaatcagg
atcccgccttgccctcaaggctggaactctctgtggatcggctactcctttgtcatgcac
accagcgcaggtgctgagggttcaggtcaggcgttggcctctcctggttcctgtctggag
gagtttcgcagcgccccattcatcgaatgtcacggtcgaggaacctgcaactactatgcc
aactcctacagcttctggctcgccaccatcgagacagaggacatgtttacgaaacccgtc
ccgacgacgctcaaagcaggcagcctccgaacacacataagccgctgtcaagtgtgcatg
aagaggacattcacttaa
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integrated database retrieval system
