Xiphophorus couchianus (Monterrey platyfish): 114149946
Help
Entry
114149946 CDS
T05908
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
114149946
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xco00536
]
114149946
Glycosaminoglycan binding proteins [BR:
xco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114149946
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
114149946
NCBI-ProteinID:
XP_027881870
LinkDB
All DBs
Position
8:7058313..7148451
Genome browser
AA seq
1791 aa
AA seq
DB search
MSLWAVKWTLCLLGSVTSSTASPDLDVGGESGSGMLPTEELNILQELSLQVSDRSNSSLT
VEGASCPVIRVGQYATLTLPMQQIFSDRFSDEFSLLVQLRSRQRDEQSVFTMLSPDSHIT
LQVRISAYAIIFIGTQQRHYEFPVSGLCDGDWHRVAFSVSRNQLQLFVDCSLLESVDWVN
HSLDIGSDGLLMVGGVLESFETPFEGELRQLSFLLDDPDGAQQHCSHHPPRCGRSAAKPP
RSPRTNVALEVTNESQRQELSRGDGTIPSRPNRKGSVGRGDVFVVEEDTDLLDPVFQSGG
VVNPQWKPRNGLKGSQKGKPDASSKKVEENITTEKKTDSRTSVLFPLKPSDNIIDLDVGG
SPKKPSLGIPLLPKTPRVSTESNELIEEFPVEISTVSPAASQAPITVQTTKSPVHQNKHE
GKETEPERGSPRIVTVVSREGDLVLGSDGKTNRLRRGRPGRMGAPGPDGCPGDPGPAGVK
GEKGKKGIKGRAGRMGQPGSPGRPGLPTFYLWRNTAEEWAAFKQTYFYQLLSAGFPTKEG
PAGPCGEMGKPGIQGLPGEPGEDGQPGIPGEMGDPGPRGPPGRPGTPGRDGDDGADGQPG
APGPPGLHGPWGHRGERGPKGEKGDEGLVGDRGPWGETGGPGEKGEAGLPGPPGPVGLPG
HQGVRGAEGEEGPAGPDGESGLDGSSGPPGPPGAPGLTGPVGAQGANGSRGEMGPAGAVG
PQGPEGPLGLQGQIGPPGHRGPQGHPGLMGAAGPKGDPGPLGPAGPRGDPGIEGPMGLPG
RPGHLGFPGATGNRGADGDKGDAGSKGDKGVPGATGVWGPQGERGPVGLPGFPGVSGPPG
PAGTEGTDGEGGLQGKQGSQGLKGNRGQDGRPGKPGPRGNKGLSGLRGHPGPPGPMGFSG
QTGPRGAEGKPGTQGLQGADGGAGFRGSRGFPGNAGERGADGPPGSPGPPGKTGPPGSPG
PPGEKGFTGKPGLEGPQGPVGMYGVVGAVGMRGPPGSIGERGEPGIRGLLAPTGKPGPKG
LPGSPGEKGPHGSQGRPGDEGPKGVLGPPGPPGLPGPSGGTGKPGPRGSIGPPGPQGPQG
PAGIPAPQGADGSMGPAGEKGHRGFPGLPGDPGAPGLSGPQGLPGLGGTEGPTGRKGDQG
DLGSCGAVGAQGPEGERGSEGDKGPQGPPGPAGREGEVGHPGEPGDPGPEGEKGDVGLPG
QTGPEGPWGSIGENGSQGPKGEKGNNGRMGEPGAAGDPGPGGLSGLQGIAGRPGRPGPDG
PPGEKGEPGPAGLSGPPGSDGPQGVIGPRGVRGDAGGFGPPGQTGQAGPKGDEGAKGEPG
MLGVTGEPGVPGPPGEQDEDGLPGIQGPSGLPGLEGPPGQMGAQGPPGLVGAPGIYGKPG
SEGKQGAKGEKGDDGEIGPSGKTGPMGRRGRRGKAGVRGTRGDRGPKGEAGEKGMTGLLG
WPGSIGIPGLPGDLGNQGEKGEEGEKGDMGIPGPPGPEGKKGSRGPVGFTGPAGQKGEQG
NIGPPGPRGVLGMPGLPGWFGLKGLKGYQGQPGVPGRRGLPGPPGVPGPPGKSLNMTFTQ
IKSLMYMSDKPNFFLIQTLLDSLQQEVRLLLDPPDGTKRRPATTCLELWLCHPEFSSGMY
YIDPNQGSSADALLAYCSFTSSSKQTCLHPEHSQLSMKAWMEESAEDGSFQWLSRLDHGH
QFSYPGESVVQMRFLRLHSVSASQRVTYSCHPGSRLGPTDTEVKFLTNTRMQSYLGQLNH
CVPVEETVYSSGESVLEFEDLQLLPLRDVAVMNSGNFTHQFSFTVGPVCFS
NT seq
5376 nt
NT seq
+upstream
nt +downstream
nt
atgtctctctgggcggtgaaatggacactttgtctcctcggctcggtgaccagcagcacc
gcttcacctgacctggatgttggaggcgagtccggatccgggatgctgccgacagaagag
ctgaatattctgcaggagctttctctgcaggtatcagatcgcagtaactcctccctgact
gtagagggcgccagctgtccggtaatcagagtaggacagtacgccaccttaacgctcccc
atgcaacagattttcagcgacaggttttcagatgagttcagtttactggtgcagcttcgt
agtcggcagagggacgaacagagcgtgttcaccatgctcagcccagacagccacatcacg
ctgcaggtccggatcagcgcctacgccatcattttcatcgggactcaacagcgccactac
gagttccccgtcagtgggctctgcgatggagactggcatcgcgttgccttcagtgtctcc
aggaatcagctgcagctgtttgtggattgctcgctgctggagagcgtggactgggtcaac
cacagcctggacatcggttctgatggactcctcatggttggaggcgtcctggagagtttt
gaaactccgtttgaaggggagctgcgtcagctgtccttcctgttggacgaccctgatggc
gcccagcagcactgcagccaccacccgccccgctgcggccgctccgctgccaaacctcct
cgctccccgcgtaccaacgtcgccctggaggtaacgaatgaatctcagcgacaagagttg
tctcgtggcgatgggacgataccttccaggccgaaccgaaagggttcagtggggcgtgga
gacgtttttgtggtcgaagaggacactgatttgttagatcccgtctttcaaagcggtgga
gtcgtgaaccctcagtggaaacctagaaatggactgaagggaagccagaagggcaaaccg
gacgcgtcgtctaaaaaagtggaggaaaacattacaacagagaaaaagacagactctcgg
acttcagtgctgtttcctctaaaaccctcggataatataatcgacttggatgttggaggt
tccccaaagaagccctcactgggaattcctctgcttcccaagactcctagagtttcaact
gagtcaaatgaactaatagaggaatttccagtggagatcagcactgtttcacctgcagct
agtcaggccccgatcactgtccagaccaccaaatcaccggtgcatcaaaacaagcatgaa
gggaaagaaacagaaccagagagaggaagccctcggattgtgaccgttgtatccagagaa
ggagatctggtcctgggatctgatgggaaaacgaaccggctccggaggggacgacctggc
aggatgggagcccccggaccagatggatgcccgggtgatcctggtcctgctggggtcaaa
ggtgaaaagggtaaaaaaggcattaaaggcagagcaggtagaatgggccagccgggttcg
ccgggacgtccaggtttaccaacattttatctgtggaggaacacagctgaggaatgggct
gcttttaagcaaacttatttctaccagctactgtcagctggttttcctactaaggaagga
cctgcaggaccttgtggagagatgggaaaacccggcatacaggggctgcctggtgaacct
ggagaggacggacaaccagggatcccgggagaaatgggggacccaggccccagagggccc
ccaggacggcccgggaccccaggcagagatggggacgatggggcagacggtcagccgggg
gctcctggacctcctggattgcatgggccgtggggccacagaggagaacgaggaccaaag
ggagagaaaggtgatgagggtctggttggcgaccgcgggccctggggggaaactggtggg
cctggtgagaagggtgaagctgggctgcctggtccccctggtcctgttggacttccagga
caccagggggtccgaggtgcagagggcgaagaaggacccgctggacccgatggggagagt
ggactggacggctcctcgggccccccagggccaccaggagcgccaggtttgaccggacca
gttggtgctcaaggagctaacggctcaaggggcgaaatgggcccagctggtgctgttggc
ccccagggtcctgaggggcctctgggtctgcagggacagatcggacctccagggcacaga
ggacctcagggtcatccaggactgatgggcgctgctgggcctaaaggagatcctgggcct
ctggggccggcgggcccccggggggatcctggcattgagggccctatgggtttgccaggc
aggccgggtcatctgggtttcccaggagccacggggaacagaggagccgacggagacaaa
ggagacgcaggatctaaaggcgacaaaggagttccaggggccacaggcgtctggggccct
cagggggagcggggccccgtcggtctgcccggcttccctggggtcagcggcccgccgggc
cctgcaggcactgaggggacggacggtgagggcggcctgcaggggaaacagggcagccag
gggttaaaggggaacagaggacaagatggccgacctggcaaacccggaccaagaggcaac
aagggtttgtctggactgaggggccatcctggcccaccgggcccaatgggtttctctggg
caaacgggaccgcggggagcagaaggaaagcctggtacacagggtttgcagggcgcagac
ggcggcgccggcttcagaggctccaggggttttccaggaaatgctggtgagagaggagca
gacgggccgcccgggtcaccggggccaccaggaaagacggggcccccgggatctccgggt
ccaccaggagaaaaaggtttcacggggaaacccggcctggaaggacctcagggcccagtt
ggcatgtatggtgtagttggggctgtgggcatgcgagggcctccaggatcaataggagaa
cggggtgaaccgggaataagaggattactggcccctactgggaagccgggtcctaaaggt
ctgccaggttctcctggagagaaaggacctcacggatctcagggccgacctggagatgaa
ggacccaaaggagtcctgggaccgcctggccctcctggtcttccaggtcccagcggtggg
acgggcaaacctggacccagaggaagcatcgggcccccagggcctcaggggccgcagggg
ccagcaggaatcccagccccacaaggcgctgatggctcaatgggaccagcaggagaaaaa
ggacacaggggtttccccggactgccaggcgatccaggagccccaggactgagcggaccg
cagggtcttcctggtcttggaggaaccgagggtccaactggaagaaaaggagatcagggg
gatctgggttcatgtggggcggttggagctcaaggacccgaaggggaacgaggatccgag
ggagataaaggcccccaggggccgccggggccagccggcagagagggagaagtcgggcat
cctggtgaacctggagaccctggacccgaaggagagaagggcgatgtgggacttcctggt
cagaccggcccagagggcccctgggggtccatcggggaaaacgggtcccaggggccaaag
ggagaaaagggaaacaacgggagaatgggtgagcctggagcggccggtgacccgggtcct
ggaggtctgtcagggctccaggggatcgcgggtcgtccaggacgaccaggaccagatgga
ccaccgggagagaagggggaaccggggccagccggactctctggacctccaggatcagac
ggtcctcagggggtcatcgggcccagaggggtcagaggagacgccggcggctttggaccg
cctggtcaaactggtcaagctggaccaaagggggatgaaggagccaaaggtgaacccggg
atgttaggggtcacaggtgaaccaggagtaccaggcccaccaggagaacaggatgaagat
ggtcttccaggaatccaaggtccttcaggtctaccagggttggagggacccccgggacag
atgggagctcagggtcctcccggccttgtaggggctcctggaatatatggaaaacctgga
tctgaagggaaacaaggcgccaaaggagaaaagggagatgatggtgaaattggaccttca
gggaaaaccggtcccatgggaaggagggggagacggggaaaggctggagtcagagggacc
agaggagaccgaggaccaaagggtgaagcaggagaaaaggggatgacaggcctgcttggc
tggccaggaagcattggaattcctgggctacctggagatctggggaatcaaggtgaaaag
ggagaagagggtgagaaaggagacatgggaatacctggaccacctggacctgagggcaaa
aagggtagtcgaggtccagtcggatttaccggtccagccggccagaaaggagaacaggga
aacatcggtccacccgggccaagaggagttctgggaatgcccggcttacccggatggttt
ggattaaaggggttgaaaggttaccaaggtcaacctggagttcctggaaggagaggcctc
ccaggcccgcctggtgttcctggccccccaggaaagtcactgaacatgactttcactcaa
ataaagagcctgatgtacatgtcagataagccgaacttcttcctgatccagacgctgctg
gactccctgcagcaggaggtgcggctgctgctggatcctcctgacgggaccaagcggcgc
ccggccaccacctgcctggagctctggctctgccaccccgagttcagcagcggaatgtat
tacatcgaccccaaccagggcagctccgccgacgctctgctggcctactgcagcttcacc
tcctcatcaaagcagacctgccttcaccccgaacactcccagctgtcgatgaaagcttgg
atggaggaatcagctgaagatggatcgtttcagtggctcagcaggctggatcacggtcat
cagttttcttacccaggtgagagtgtggtgcagatgcgtttcctgcggctgcacagcgtc
tctgcgtctcagagggtcacctactcctgtcatccaggaagccgtctgggtccgaccgac
acagaggtgaaattcctcaccaataccaggatgcaaagctacctcggacagctgaatcac
tgtgtgcctgtggaggagacggtttatagttctggagagtctgtgttggagttcgaggac
ctgcagctgcttcctctcagagacgtggcggtgatgaacagcgggaacttcacgcaccag
ttcagcttcaccgtcggacccgtgtgtttcagctag
DBGET
integrated database retrieval system
