Xiphophorus couchianus (Monterrey platyfish): 114155197
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Entry
114155197 CDS
T05908
Name
(RefSeq) general transcription factor IIH subunit 2-like
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03022
Basal transcription factors
xco03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
114155197
09124 Replication and repair
03420 Nucleotide excision repair
114155197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xco03021
]
114155197
03400 DNA repair and recombination proteins [BR:
xco03400
]
114155197
Transcription machinery [BR:
xco03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
114155197
DNA repair and recombination proteins [BR:
xco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
114155197
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
DZR
Motif
Other DBs
NCBI-GeneID:
114155197
NCBI-ProteinID:
XP_027890786
LinkDB
All DBs
Position
12:668420..683919
Genome browser
AA seq
392 aa
AA seq
DB search
MDEEPERAKRWEGGYERTWEVLKEDESGSLKATVEEILYESKRKRVTQSHAQVRLGMMRH
IYVVIDCSRSMEDQDLKPNRLTSTLKLMEGFIDEYFDQNPISQVGIITTKNKRAEKLTEL
AGNPKKHIAALKKAVDSSCVGEPSLYNSLSLAIQTLKHMPGHTSREILIILSSLTTCDPA
NIYELIKTLKSLKVRVSVIGLSAEVRVCTVLTRDTGGSYHVILDESHFKELLMLHVKPPP
ASFSSESSLIRMGFPQHTVASLSDQDVKPSFSMSHLDSSGGPALTLGGYFCPQCQAKYTE
LPVECKVCGLTLVSAPHLARSFHHLFPLQAFIESPAENYQQNRFCQACQGQLKDKNVFAC
PLCRSVFCGECDLFIHESLHCCPCCIHNRTAT
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagagccagagagagccaagcgctgggaaggaggttatgaaaggacatgggag
gtgcttaaggaggatgagtctggctcccttaaagccacagtggaggagattctgtacgag
tccaaaagaaaaagggtgacacaaagccatgcacaagtgaggcttgggatgatgcgccac
atatatgttgttattgactgttcacgcagtatggaggaccaggacttaaaacccaaccgt
ctcacctctaccctgaagctgatggagggattcatcgatgaatactttgaccagaatccc
atcagccaggttggcattatcaccaccaaaaacaaaagggctgagaagcttacagaactt
gcaggaaatccaaagaagcacattgctgctctgaagaaagcagttgacagctcatgtgtc
ggagagccttccctgtacaactctctcagcttagctatacagactctcaagcacatgcct
gggcacaccagcagagaaatcctcatcatcctcagcagcttgaccacatgtgacccagct
aacatctatgagctaatcaagaccctgaagtctcttaaggtgcgagtgtcagtaattggc
ctctcagcggaagtccgagtgtgcacggttctgaccagagacacaggtggatcctaccat
gttatcctagatgagagtcacttcaaagagctgctcatgcttcatgtcaaacctccgcca
gcaagcttctcatcggaaagctctttaatacgaatgggttttcctcagcacactgtagcc
tctctgagtgaccaagatgtcaaaccatcattcagcatgtctcatctggacagcagtggc
ggcccggctctgactctaggaggatacttctgtccgcagtgccaagcaaaatacaccgag
cttcctgtggagtgtaaagtctgtggtttgacgctggtgtctgctccacatctggccaga
tcctttcatcatctgtttcccctccaagcatttattgagagtccagctgagaattatcag
cagaataggttctgtcaggcctgtcaagggcagctgaaagataaaaatgtcttcgcctgt
cctttgtgtcgcagtgtgttctgtggagagtgtgatctcttcatccatgaatcactgcac
tgctgtccctgctgcattcacaatcggactgctacatga
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