Xiphophorus couchianus (Monterrey platyfish): 114160844
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Entry
114160844 CDS
T05908
Gene name
smo
Definition
(RefSeq) smoothened homolog
KO
K06226
smoothened
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
114160844 (smo)
G protein-coupled receptors [BR:
xco04030
]
Frizzled / Smoothened family
114160844 (smo)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Frizzled
Fz
Motif
Other DBs
NCBI-GeneID:
114160844
NCBI-ProteinID:
XP_027899507
LinkDB
All DBs
Position
17
AA seq
811 aa
AA seq
DB search
MSSQGRSPIVGMLCVWAAWLSGCRAVMAPNGTMFEDNCKKTSTCEVLKYNTCLGSPLPYT
HTSLILAEDSSSQEEAFEKLTMWSGLRNAPRCWSVIQPLLCAVYMPKCENGRVELPSKSL
CLATRRPCSIVDRERGWPNFLKCDKFPVGCSNEVQKLKFNTSGQCEAPLVKTDIQSSWYK
DVEGCGIQCDNPLFTEEEHNDMHAYIAYFGTITLLCTFFTLATFLADWKNSNRYPAVILF
YINACFFVGSIGWLAQFLDGARKEIVCKSDNTMRLGEPSSSETLSCVTIFIIVYYSLMSG
VIWFVMLTYAWHTSFKALGTTHQPLSGRTSYFHMVTWSIPFVLTVAILAIAEVDGDSVSG
ICFVGYKNYHFRAGFVLAPIGVVLVVGGYFLIRGVMTLFSIKSNHPGLLSEKAASKINET
MLRLGIFGFLAFGFVLITFGCHFYDFFNQAEWERSFREYVLCEANVTIASQTNKPIPECT
IKNRPSLMVEKINLFSMFGTGIAMSTWVWTKATFLIWKRTWFKIIGRSDNEPKRIKKSKM
IAKAFAMRKELHKDPEKELSFSMHTVSHDGPVAGINFDLNEPSNDVSSAWALHVPKMVAR
RGAILPQDISVTPTGTPVPPPEERNRLWMVEADISPEMIKRKKKKKKRRKEVRNPDVVVE
NQTRLQREFGRSSVPRLPKLPCHPSLVANLREQQRQQTLEQGILPGSLPDYEPCEERCSY
LERRSSRNGYLMTRVDCPENLGLRPSCHPLTSNWQPSGSSMYPREVERTDGLSERMAHVA
RVPAGRRAGYGPIHSRTNLMEAELMDADSDF
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcccagggtcggagccccattgttgggatgctttgcgtctgggctgcctggctg
tcgggctgcagggcagtgatggccccgaacgggactatgtttgaggacaactgcaagaaa
acctccacttgtgaggtgcttaaatacaacacatgtttgggttcacctttaccctacacc
catacatctctgatcctggcggaggactccagcagccaagaggaggcttttgagaagctg
accatgtggtctggattgcgaaacgccccacgttgctggtcagtcatccagccactgctc
tgtgccgtctacatgccgaaatgcgagaatggccgagtggagctgcccagcaagagcctg
tgtctggccacacgtcgcccatgcagcattgtggatcgggagagaggatggcccaatttc
ctcaaatgtgacaaatttcctgtgggctgttcgaatgaagtgcagaagctgaagttcaac
acgtcaggccagtgcgaagcccctctggtgaagacagacatacagtcgagttggtacaag
gatgtagaaggctgtggtatccagtgcgacaaccccttgttcaccgaagaggagcacaat
gacatgcacgcctacattgcttactttggcacaatcacactcctctgcacctttttcact
ctggccacatttcttgctgactggaaaaactcgaaccgctacccggctgtcattctcttc
tacatcaacgcctgcttctttgtgggcagcattggctggctcgcccagttcctggacgga
gcacgcaaagagattgtgtgcaagagtgacaacaccatgcggctcggggagccctcgtct
tcagaaacgctctcgtgcgtcaccatcttcatcatcgtctattactccttgatgtcaggc
gtgatttggttcgtcatgctgacctacgcctggcacacctccttcaaggctctgggtaca
actcaccagccactgtccggacggacctcctacttccacatggtgacctggtccattccc
tttgtcctcactgtggccatccttgctatagctgaggtggatggagactctgtgagtggg
atctgctttgtcggctacaagaactaccatttccgagccgggtttgtgctggcgcccatt
ggagtggtgcttgttgttggtggttactttctcattcggggtgtcatgaccttattttcc
atcaagagtaaccaccctggactactgagtgagaaagcagccagcaaaatcaatgagaca
atgctgagactaggtatatttggattccttgcctttggctttgttctcatcacattcgga
tgtcacttctatgacttcttcaaccaggctgaatgggagaggagcttcagagaatatgtg
ctatgtgaagccaacgtgacaatcgcctctcaaaccaacaagcccatcccagaatgcacc
attaaaaaccgtcccagcctgatggtggagaagatcaacctgttctccatgttcggcaca
ggaatcgccatgagcacctgggtctggaccaaagctaccttcctcatctggaaacgcact
tggttcaagatcattggtcgaagtgacaatgaacctaagaggataaagaagagcaagatg
attgctaaggcgttcgcaatgagaaaggagctccacaaggacccggagaaggagctgtcc
ttcagcatgcatactgtgtcacatgatggcccagtggctggaatcaattttgacctgaac
gagccgtcaaatgatgtttcatcagcatgggcgctccatgtacccaagatggtcgccaga
cggggagccattctgcctcaggacatttctgtcactcccactgggactccagtgccccct
ccagaggagaggaacagactgtggatggtggaggcagacatatcacctgagatgataaag
aggaaaaagaagaagaagaaaaggaggaaggaggtacgtaaccctgacgttgtggtggaa
aaccagactcgacttcagcgagagtttggccgcagctcagttcctcgcctgccgaaactt
ccctgccacccaagcctggtggccaatctgcgtgaacagcagaggcagcagacgctggag
cagggcatcctgccgggctcgttgccagattatgaaccctgcgaggaaaggtgttcatac
ttggagcgcaggagcagcagaaacggttacctgatgacccgagttgattgtccagaaaat
ctgggcctcaggccaagctgtcaccctttgacttcaaactggcagcccagtggatcgtca
atgtaccccagagaggtggagcgtactgacggactgtcagagagaatggctcatgtggct
cgggtaccggcgggccgcagggcaggctacggacccatccactccaggaccaatttaatg
gaggcggagcttatggatgctgactctgacttttaa
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